pom.xml 13.7 KB
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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    <modelVersion>4.0.0</modelVersion>
    <parent>
        <groupId>eu.elixir.ega.ebi</groupId>
        <artifactId>ega-data-api</artifactId>
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        <version>1.2.1-SNAPSHOT</version>
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    </parent>

    <artifactId>ega-data-api-res</artifactId>
    <name>EGA Data API RES (ReEncryptionService)</name>
    <description>Standard Web ReEncryption Service</description>
    <packaging>jar</packaging>

    <dependencies>
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        <dependency>
           <groupId>org.apache.httpcomponents</groupId>
           <artifactId>httpclient</artifactId>
           <version>4.5.7</version>
       </dependency>
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        <!-- Spring -->
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-aop</artifactId>
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            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>log4j-over-slf4j</artifactId>
                </exclusion>
            </exclusions>
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        </dependency>
        <dependency>
            <groupId>org.springframework.cloud</groupId>
            <artifactId>spring-cloud-starter-config</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.cloud</groupId>
            <artifactId>spring-cloud-starter-eureka</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-websocket</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-actuator</artifactId>
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        </dependency>
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        <dependency>
            <groupId>org.springframework</groupId>
            <artifactId>spring-context-support</artifactId>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>org.springframework.retry</groupId>
            <artifactId>spring-retry</artifactId>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>org.bouncycastle</groupId>
            <artifactId>bcpg-jdk15on</artifactId>
            <version>1.58</version>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <version>2.6</version>
        </dependency>
        <!-- exclude tomcat jdbc connection pool, use HikariCP -->
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-jdbc</artifactId>
            <exclusions>
                <exclusion>
                    <groupId>org.apache.tomcat</groupId>
                    <artifactId>tomcat-jdbc</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
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        <dependency>
            <groupId>com.zaxxer</groupId>
            <artifactId>HikariCP</artifactId>
            <version>2.6.0</version>
        </dependency>
        <dependency>
            <groupId>org.postgresql</groupId>
            <artifactId>postgresql</artifactId>
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            <version>42.2.5</version>
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        </dependency>
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        <!-- EGA-archive htsjdk -->
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        <dependency>
            <groupId>eu.elixir.ega.ebi</groupId>
            <artifactId>ega-htsjdk</artifactId>
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            <version>1.0.0</version>
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        </dependency>

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        <!-- SamTools dependencies -->
        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
            <version>2.23.0</version>
        </dependency>

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        <!-- Other -->
        <dependency>
            <groupId>org.projectlombok</groupId>
            <artifactId>lombok</artifactId>
            <version>1.16.10</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>io.springfox</groupId>
            <artifactId>springfox-swagger-ui</artifactId>
            <version>2.9.2</version>
            <scope>compile</scope>
        </dependency>
        <dependency>
            <groupId>io.springfox</groupId>
            <artifactId>springfox-swagger2</artifactId>
            <version>2.9.2</version>
            <scope>compile</scope>
        </dependency>
        <dependency>
            <groupId>com.amazonaws</groupId>
            <artifactId>aws-java-sdk</artifactId>
            <version>1.9.40</version>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
            <version>22.0</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>org.cache2k</groupId>
            <artifactId>cache2k-core</artifactId>
            <version>1.0.2.Final</version>
        </dependency>
        <dependency>
            <groupId>com.google.code.gson</groupId>
            <artifactId>gson</artifactId>
            <version>2.8.0</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>org.connid</groupId>
            <artifactId>connid-framework-internal</artifactId>
            <version>1.3.3</version>
        </dependency>
        <dependency>
            <groupId>org.syncope.identityconnectors</groupId>
            <artifactId>framework</artifactId>
            <version>0.4.1</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-crypto</artifactId>
            <version>1.0.0</version>
        </dependency>
        <dependency>
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            <groupId>com.github.uio-bmi</groupId>
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            <artifactId>crypt4gh</artifactId>
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            <version>v1.2.1</version>
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            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j-jdk14</artifactId>
                </exclusion>
            </exclusions>
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        </dependency>
        <dependency>
            <groupId>io.minio</groupId>
            <artifactId>minio</artifactId>
            <version>5.0.1</version>
        </dependency>
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		<dependency>
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			<groupId>uk.ac.ebi.ega</groupId>
			<artifactId>fire-v3-core</artifactId>
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			<version>1.1.2</version>
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			<exclusions>
				<exclusion>
					<groupId>ch.qos.logback</groupId>
					<artifactId>logback-classic</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
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        <!-- Test -->
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-test</artifactId>
            <scope>test</scope>
        </dependency>
        <!-- PowerMock -->
        <dependency>
            <groupId>org.powermock</groupId>
            <artifactId>powermock-core</artifactId>
            <version>1.6.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.powermock</groupId>
            <artifactId>powermock-module-junit4</artifactId>
            <version>1.6.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.powermock</groupId>
            <artifactId>powermock-api-mockito</artifactId>
            <version>1.6.1</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <version>2.0.103-beta</version>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <groupId>org.springframework.cloud</groupId>
                <artifactId>spring-cloud-dependencies</artifactId>
                <version>Dalston.SR5</version>
                <type>pom</type>
                <scope>import</scope>
            </dependency>
            <dependency>
                <groupId>org.springframework.cloud</groupId>
                <artifactId>spring-cloud-starter-parent</artifactId>
                <version>Dalston.SR5</version>
                <type>pom</type>
                <scope>import</scope>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <profiles>
        <profile>
            <id>production</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.springframework.boot</groupId>
                        <artifactId>spring-boot-maven-plugin</artifactId>
                        <configuration>
                            <fork>true</fork>
                            <includeSystemScope>true</includeSystemScope>
                        </configuration>
                    </plugin>
                    <plugin>
                        <groupId>com.spotify</groupId>
                        <artifactId>docker-maven-plugin</artifactId>
                        <version>${docker.maven.version}</version>
                        <configuration>
                            <imageName>${dockerRegistry}/ega-res</imageName>
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                            <baseImage>openjdk:8</baseImage>
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                            <imageTags>
                                <imageTag>${image.version}</imageTag>
                                <imageTag>latest</imageTag>
                            </imageTags>
                            <entryPoint>["java", "-jar", "/${project.build.finalName}.jar"]</entryPoint>
                            <resources>
                                <resource>
                                    <targetPath>/</targetPath>
                                    <directory>${project.build.directory}</directory>
                                    <include>${project.build.finalName}.jar</include>
                                </resource>
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                                <resource>
									<targetPath>/</targetPath>
									<directory>${project.basedir}</directory>
									<include>src/test/resources/</include>
								</resource>
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                            </resources>
                        </configuration>
                        <executions>
                            <execution>
                                <id>build-image</id>
                                <phase>package</phase>
                                <goals>
                                    <goal>build</goal>
                                </goals>
                            </execution>
                            <execution>
                                <id>push-image</id>
                                <phase>package</phase>
                                <goals>
                                    <goal>push</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
        <profile>
            <id>debug</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.springframework.boot</groupId>
                        <artifactId>spring-boot-maven-plugin</artifactId>
                        <configuration>
                            <fork>true</fork>
                            <includeSystemScope>true</includeSystemScope>
                        </configuration>
                    </plugin>
                    <plugin>
                        <groupId>com.spotify</groupId>
                        <artifactId>docker-maven-plugin</artifactId>
                        <version>${docker.maven.version}</version>
                        <configuration>
                            <imageName>${dockerRegistry}/ega-res</imageName>
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                            <baseImage>openjdk:8</baseImage>
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                            <imageTags>
                                <imageTag>${image.version}</imageTag>
                                <imageTag>latest</imageTag>
                            </imageTags>
                            <entryPoint>["java", "${debug.config}${debug.res.port}", "-jar", "/${project.build.finalName}.jar"]</entryPoint>
                            <resources>
                                <resource>
                                    <targetPath>/</targetPath>
                                    <directory>${project.build.directory}</directory>
                                    <include>${project.build.finalName}.jar</include>
                                </resource>
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                                <resource>
									<targetPath>/</targetPath>
									<directory>${project.basedir}</directory>
									<include>src/test/resources/</include>
								</resource>
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                            </resources>
                        </configuration>
                        <executions>
                            <execution>
                                <id>build-image</id>
                                <phase>package</phase>
                                <goals>
                                    <goal>build</goal>
                                </goals>
                            </execution>
                            <execution>
                                <id>push-image</id>
                                <phase>package</phase>
                                <goals>
                                    <goal>push</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>

    <repositories>
        <repository>
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            <id>jitpack.io</id>
            <url>https://jitpack.io</url>
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        </repository>
    </repositories>

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</project>