Commit 27f8c6f4 authored by David Mendez's avatar David Mendez
Browse files

Merge branch 'staging' into 'master'

Add querystring configurations for target, compounds, and drug warnings

See merge request !69
parents 31de6247 81dfdcce
......@@ -85,6 +85,17 @@ chembl_molecule:
default: ['molecule_chembl_id', 'biotherapeutic.biocomponents']
sdf_data:
default: ['molecule_structures.molfile']
querystring:
default: [ 'molecule_chembl_id', 'pref_name', 'molecule_synonyms', 'molecule_type', 'max_phase',
'molecule_properties.full_mwt', '_metadata.related_targets.count', '_metadata.related_activities.count',
'molecule_properties.alogp', 'molecule_properties.psa', 'molecule_properties.hba', 'molecule_properties.hbd',
'molecule_properties.num_ro5_violations', 'molecule_properties.rtb', 'molecule_properties.ro3_pass',
'molecule_properties.qed_weighted', 'molecule_properties.cx_most_apka', 'molecule_properties.cx_most_bpka',
'molecule_properties.cx_logp', 'molecule_properties.cx_logd', 'molecule_properties.aromatic_rings',
'structure_type', 'inorganic_flag', 'molecule_properties.heavy_atoms', 'molecule_properties.hba_lipinski',
'molecule_properties.hbd_lipinski', 'molecule_properties.num_lipinski_ro5_violations',
'molecule_properties.mw_monoisotopic', 'molecule_properties.molecular_species',
'molecule_properties.full_molformula', 'molecule_structures.canonical_smiles' ]
chembl_assay:
download:
default: ['assay_chembl_id', 'assay_type', 'description', 'assay_organism', '_metadata.related_compounds.count',
......@@ -128,6 +139,9 @@ chembl_target:
optional: ['tax_id', 'species_group_flag']
references:
default: ['cross_references']
querystring:
default: [ 'target_chembl_id', 'pref_name', 'uniprot_accessions', 'target_type', 'organism',
'_metadata.related_compounds.count', '_metadata.related_activities.count', 'tax_id', 'species_group_flag' ]
chembl_document:
download:
default: ['document_chembl_id', 'journal_full_title', 'src_id', '_metadata.source', 'title', 'pubmed_id', 'doi',
......@@ -234,3 +248,12 @@ chembl_drug_warning_by_parent:
default: [ 'drug_warning.molecule_chembl_id', 'drug_warning.parent_molecule_chembl_id', 'drug_warning.warning_type',
'drug_warning.warning_class', 'drug_warning.warning_description',
'drug_warning.where', 'drug_warning.warning_refs' ]
download:
default: [ 'drug_warning.molecule_chembl_id', 'drug_warning.parent_molecule_chembl_id', 'drug_warning.warning_type',
'drug_warning.warning_class', 'drug_warning.warning_description',
'drug_warning.where', 'drug_warning.warning_refs' ]
querystring:
default: [ 'drug_warning.molecule_chembl_id', 'drug_warning.parent_molecule_chembl_id', 'drug_warning.warning_type',
'drug_warning.warning_class', 'drug_warning.warning_description',
'drug_warning.where.country', 'drug_warning.where.year', 'drug_warning.warning_refs.ref_url',
'drug_warning.warning_refs.ref_type', 'drug_warning.warning_refs.ref_id']
......@@ -363,5 +363,16 @@ chembl_drug_warning_by_parent:
label: 'Description'
'drug_warning.where':
label: 'Where'
'drug_warning.where.country':
label: 'Warning Country'
'drug_warning.where.year':
label: 'Warning Year'
'drug_warning.warning_refs':
label: 'References'
'drug_warning.warning_refs.ref_url':
label: 'Reference URL'
'drug_warning.warning_refs.ref_type':
label: 'Reference Type'
'drug_warning.warning_refs.ref_id':
label: 'Reference ID'
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