chembl_molecule: download: default: ['molecule_chembl_id', 'pref_name', 'molecule_synonyms', 'molecule_type', 'max_phase', 'molecule_properties.full_mwt', '_metadata.related_targets.count', '_metadata.related_activities.count', 'molecule_properties.alogp', 'molecule_properties.psa', 'molecule_properties.hba', 'molecule_properties.hbd', 'molecule_properties.num_ro5_violations', 'molecule_properties.rtb', 'molecule_properties.ro3_pass', 'molecule_properties.qed_weighted', 'molecule_properties.cx_most_apka', 'molecule_properties.cx_most_bpka', 'molecule_properties.cx_logp', 'molecule_properties.cx_logd', 'molecule_properties.aromatic_rings', 'structure_type', 'inorganic_flag', 'molecule_properties.heavy_atoms', 'molecule_properties.hba_lipinski', 'molecule_properties.hbd_lipinski', 'molecule_properties.num_lipinski_ro5_violations', 'molecule_properties.mw_monoisotopic', 'molecule_properties.molecular_species', 'molecule_properties.full_molformula', 'molecule_structures.canonical_smiles'] browser_table: default: ['molecule_chembl_id', 'pref_name', 'molecule_synonyms', 'molecule_type', 'max_phase', 'molecule_properties.full_mwt', '_metadata.related_targets.count', '_metadata.related_activities.count', 'molecule_properties.alogp', 'molecule_properties.psa', 'molecule_properties.hba', 'molecule_properties.hbd', 'molecule_properties.num_ro5_violations', 'molecule_properties.rtb', 'molecule_properties.ro3_pass', 'molecule_properties.qed_weighted'] optional: ['molecule_properties.cx_most_apka', 'molecule_properties.cx_most_bpka', 'molecule_properties.cx_logp', 'molecule_properties.cx_logd', 'molecule_properties.aromatic_rings', 'structure_type', 'inorganic_flag', 'molecule_properties.heavy_atoms', 'molecule_properties.hba_lipinski', 'molecule_properties.hbd_lipinski', 'molecule_properties.num_lipinski_ro5_violations', 'molecule_properties.mw_monoisotopic', 'molecule_properties.molecular_species', 'molecule_properties.full_molformula', 'molecule_structures.canonical_smiles'] browser_cards: default: ['molecule_chembl_id', 'pref_name'] alternate_forms_carousel: default: ['molecule_chembl_id'] download_drugs: default: ['drug_parent_molecule_chembl_id', 'molecule_synonyms', 'research_codes', 'drug_phase', '_metadata.drug.drug_data.applicants', 'usan_stem', 'usan_year', 'usan_stem_definition', '_metadata.drug.drug_data.usan_stem_substem', 'first_approval', 'drug_atc_codes', 'drug_atc_codes_level_4', 'drug_atc_codes_level_3', 'drug_atc_codes_level_2', 'drug_atc_codes_level_1', 'indication_class', '_metadata.drug.drug_data.sc_patent', '_metadata.drug.drug_data.drug_type', '_metadata.drug.drug_data.rule_of_five', '_metadata.drug.drug_data.first_in_class', '_metadata.compound_generated.chirality_label', '_metadata.drug.drug_data.prodrug', '_metadata.drug.drug_data.oral', '_metadata.drug.drug_data.parenteral', '_metadata.drug.drug_data.topical', '_metadata.drug.drug_data.black_box', '_metadata.compound_generated.availability_type_label', '_metadata.drug.drug_data.withdrawn_year', '_metadata.drug.drug_data.withdrawn_reason', '_metadata.drug.drug_data.withdrawn_country', '_metadata.drug.drug_data.withdrawn_class', 'molecule_structures.canonical_smiles'] browser_cards_drugs: default: ['drug_parent_molecule_chembl_id', 'molecule_synonyms', 'research_codes', 'drug_phase'] browser_table_drugs: default: ['drug_parent_molecule_chembl_id', 'molecule_synonyms', 'research_codes', 'drug_phase', '_metadata.drug.drug_data.applicants', 'usan_stem', 'usan_year', 'first_approval', 'drug_atc_codes', 'drug_icon'] optional: ['usan_stem_definition', '_metadata.drug.drug_data.usan_stem_substem', 'drug_atc_codes_level_4', 'drug_atc_codes_level_3', 'drug_atc_codes_level_2', 'drug_atc_codes_level_1', 'indication_class', '_metadata.drug.drug_data.sc_patent', 'withdrawn_year', 'withdrawn_reason', 'withdrawn_country', 'withdrawn_class', 'molecule_structures.canonical_smiles'] download_similarity: default: ['similarity', 'molecule_chembl_id', 'pref_name', 'molecule_synonyms', 'molecule_type', 'max_phase', 'molecule_properties.full_mwt', '_metadata.related_targets.count', '_metadata.related_activities.count', 'molecule_properties.alogp', 'molecule_properties.psa', 'molecule_properties.hba', 'molecule_properties.hbd', 'molecule_properties.num_ro5_violations', 'molecule_properties.rtb', 'molecule_properties.ro3_pass', 'molecule_properties.qed_weighted', 'molecule_properties.cx_most_apka', 'molecule_properties.cx_most_bpka', 'molecule_properties.cx_logp', 'molecule_properties.cx_logd', 'molecule_properties.aromatic_rings', 'structure_type', 'inorganic_flag', 'molecule_properties.heavy_atoms', 'molecule_properties.hba_lipinski', 'molecule_properties.hbd_lipinski', 'molecule_properties.num_lipinski_ro5_violations', 'molecule_properties.mw_monoisotopic', 'molecule_properties.molecular_species', 'molecule_properties.full_molformula', 'molecule_structures.canonical_smiles'] browser_cards_similarity: default: ['molecule_chembl_id', 'pref_name', 'similarity'] browser_table_similarity: default: ['similarity', 'molecule_chembl_id', 'pref_name', 'molecule_synonyms', 'molecule_type', 'max_phase', 'molecule_properties.full_mwt', '_metadata.related_targets.count', '_metadata.related_activities.count', 'molecule_properties.alogp', 'molecule_properties.psa', 'molecule_properties.hba', 'molecule_properties.hbd', 'molecule_properties.num_ro5_violations', 'molecule_properties.rtb', 'molecule_properties.ro3_pass', 'molecule_properties.qed_weighted'] optional: ['molecule_properties.cx_most_apka', 'molecule_properties.cx_most_bpka', 'molecule_properties.cx_logp', 'molecule_properties.cx_logd', 'molecule_properties.aromatic_rings', 'structure_type', 'inorganic_flag', 'molecule_properties.heavy_atoms', 'molecule_properties.hba_lipinski', 'molecule_properties.hbd_lipinski', 'molecule_properties.num_lipinski_ro5_violations', 'molecule_properties.mw_monoisotopic', 'molecule_properties.molecular_species', 'molecule_properties.full_molformula', 'molecule_structures.canonical_smiles'] compound_sources: default: ['sources_list', 'additional_sources_list'] withdrawal_info: default: ['withdrawn_year', 'withdrawn_reason', 'withdrawn_country', 'withdrawn_class'] clinical_data: default: ['clinical_trials_terms', 'chochrane_terms'] helm_notation: default: ['helm_notation'] biocomponents: default: ['molecule_chembl_id', 'biotherapeutic.biocomponents'] sdf_data: default: ['molecule_structures.molfile'] querystring: default: [ 'molecule_chembl_id', 'pref_name', 'molecule_synonyms', 'molecule_type', 'max_phase', 'molecule_properties.full_mwt', '_metadata.related_targets.count', '_metadata.related_activities.count', 'molecule_properties.alogp', 'molecule_properties.psa', 'molecule_properties.hba', 'molecule_properties.hbd', 'molecule_properties.num_ro5_violations', 'molecule_properties.rtb', 'molecule_properties.ro3_pass', 'molecule_properties.qed_weighted', 'molecule_properties.cx_most_apka', 'molecule_properties.cx_most_bpka', 'molecule_properties.cx_logp', 'molecule_properties.cx_logd', 'molecule_properties.aromatic_rings', 'structure_type', 'inorganic_flag', 'molecule_properties.heavy_atoms', 'molecule_properties.hba_lipinski', 'molecule_properties.hbd_lipinski', 'molecule_properties.num_lipinski_ro5_violations', 'molecule_properties.mw_monoisotopic', 'molecule_properties.molecular_species', 'molecule_properties.full_molformula', 'molecule_structures.canonical_smiles' ] chembl_assay: download: default: ['assay_chembl_id', 'assay_type', 'description', 'assay_organism', '_metadata.related_compounds.count', '_metadata.related_activities.count', 'bao_format', 'bao_label', 'confidence_score', '_metadata.assay_generated.confidence_label','assay_strain', '_metadata.source.src_description', 'assay_tax_id', 'assay_type', 'tissue_chembl_id', 'assay_tissue', 'assay_cell_type', 'assay_subcellular_fraction', 'document_chembl_id', '_metadata.document_data.pubmed_id', '_metadata.document_data.doi', '_metadata.document_data.year', '_metadata.document_data.journal', '_metadata.document_data.volume', '_metadata.document_data.first_page','_metadata.document_data.last_page', 'assay_parameters', 'assay_classifications_level1', 'assay_classifications_level2', 'assay_classifications_level3', 'variant_sequence.accession', 'variant_sequence.mutation' ] browser_table: default: ['assay_chembl_id', 'assay_type', 'description', 'assay_organism', '_metadata.related_compounds.count', 'document_chembl_id', 'bao_label', '_metadata.source.src_description'] optional: ['_metadata.related_activities.count', 'bao_format', 'confidence_score', '_metadata.assay_generated.confidence_label', 'assay_strain', 'assay_tax_id', 'assay_type', 'tissue_chembl_id', 'assay_tissue', 'assay_cell_type', 'assay_subcellular_fraction', '_metadata.document_data.pubmed_id', '_metadata.document_data.doi', '_metadata.document_data.year', '_metadata.document_data.journal', '_metadata.document_data.volume', '_metadata.document_data.first_page','_metadata.document_data.last_page', 'assay_parameters', 'assay_classifications_level1', 'assay_classifications_level2', 'assay_classifications_level3', 'variant_sequence.accession', 'variant_sequence.mutation'] assay_parameters: default: ['assay_parameters_report_card_rows'] chembl_target: download: default: ['target_chembl_id', 'pref_name', 'uniprot_accessions', 'target_type', 'organism', '_metadata.related_compounds.count', '_metadata.related_activities.count', 'tax_id', 'species_group_flag'] download_blast: default: ['best_expectation', 'best_positives', 'best_identities', 'best_score_bits', 'best_score', 'length', 'target_chembl_id', 'pref_name', 'uniprot_accessions', 'target_type', 'organism', '_metadata.related_compounds.count', '_metadata.related_activities.count', 'tax_id', 'species_group_flag'] browser_table: default: [ 'target_chembl_id', 'pref_name', 'uniprot_accessions', 'target_type', 'organism', '_metadata.related_compounds.count', '_metadata.related_activities.count'] optional: ['tax_id', 'species_group_flag'] browser_table_blast: default: ['best_expectation', 'best_positives', 'best_identities', 'best_score_bits', 'best_score', 'length', 'target_chembl_id', 'pref_name', 'uniprot_accessions', 'target_type', 'organism', '_metadata.related_compounds.count', '_metadata.related_activities.count'] optional: ['tax_id', 'species_group_flag'] references: default: ['cross_references'] querystring: default: [ 'target_chembl_id', 'pref_name', 'uniprot_accessions', 'target_type', 'organism', '_metadata.related_compounds.count', '_metadata.related_activities.count', 'tax_id', 'species_group_flag' ] chembl_document: download: default: ['document_chembl_id', 'journal_full_title', 'src_id', '_metadata.source', 'title', 'pubmed_id', 'doi', 'patent_id', 'authors', 'year', 'volume', 'issue', 'first_page', 'last_page', 'doc_type', 'abstract', '_metadata.related_compounds.count', '_metadata.related_targets.count', '_metadata.related_activities.count'] browser_table: default: ['document_chembl_id', 'journal_full_title', '_metadata.source', 'title', 'pubmed_id', 'doi', 'patent_id', 'authors', 'year', 'volume', 'issue', 'first_page', 'last_page', '_metadata.related_activities.count'] optional: ['src_id', 'abstract', '_metadata.related_compounds.count', '_metadata.related_targets.count'] chembl_cell_line: download: default: ['cell_chembl_id', 'cell_name', 'cell_description', 'cell_source_organism', 'cell_source_tissue', 'cell_source_tax_id', 'clo_id', 'efo_id', 'cellosaurus_id', 'cl_lincs_id', '_metadata.related_compounds.count', '_metadata.related_activities.count'] browser_table: default: ['cell_chembl_id', 'cell_name', 'cell_description', 'cell_source_organism', 'cell_source_tissue', '_metadata.related_activities.count'] optional: ['cell_source_tax_id', 'clo_id', 'efo_id', 'cellosaurus_id', 'cl_lincs_id', '_metadata.related_compounds.count'] chembl_tissue: download: default: ['tissue_chembl_id', 'pref_name', 'uberon_id', 'efo_id', 'bto_id', 'caloha_id', '_metadata.related_compounds.count', '_metadata.related_activities.count'] browser_table: default: ['tissue_chembl_id', 'pref_name', 'uberon_id', 'efo_id', '_metadata.related_activities.count'] optional: ['bto_id', 'caloha_id', '_metadata.related_compounds.count'] chembl_drug_indication_by_parent: download: default: ['parent_molecule.molecule_chembl_id', 'parent_molecule.pref_name', 'parent_molecule.molecule_type', 'drug_indication.max_phase_for_ind', 'parent_molecule.first_approval', 'drug_indication.mesh_id', 'drug_indication.mesh_heading', 'efo_ids', 'efo_terms', 'drug_indication.indication_refs', 'parent_molecule._metadata.drug.drug_data.synonyms', 'parent_molecule._metadata.drug.drug_data.usan_stem', 'parent_molecule._metadata.drug.drug_data.usan_year'] browser_table: default: ['parent_molecule.molecule_chembl_id', 'parent_molecule.pref_name', 'parent_molecule.molecule_type', 'drug_indication.max_phase_for_ind', 'parent_molecule.first_approval', 'drug_indication.mesh_id', 'drug_indication.mesh_heading', 'efo_ids', 'efo_terms', 'drug_indication.indication_refs'] optional: ['parent_molecule._metadata.drug.drug_data.synonyms', 'parent_molecule._metadata.drug.drug_data.usan_stem', 'parent_molecule._metadata.drug.drug_data.usan_year'] report_card_table: default: ['drug_indication.mesh_id', 'drug_indication.mesh_heading', 'efo_ids', 'efo_terms', 'drug_indication.max_phase_for_ind', 'parent_molecule.first_approval', 'drug_indication.indication_refs'] chembl_mechanism_by_parent_target: download: default: ['parent_molecule.molecule_chembl_id', 'parent_molecule.pref_name', 'parent_molecule.molecule_type', 'mechanism_of_action.max_phase', 'parent_molecule.first_approval', 'parent_molecule.usan_stem', 'parent_molecule.molecule_structures.canonical_smiles', 'mechanism_of_action.mechanism_of_action', 'mechanism_of_action.mechanism_comment', 'mechanism_of_action.selectivity_comment', 'target.target_chembl_id', 'target.pref_name', 'mechanism_of_action.action_type', 'target.target_type', 'target.organism', 'binding_site.site_name', 'mechanism_of_action.binding_site_comment', 'mechanism_of_action.mechanism_refs', 'parent_molecule._metadata.drug.drug_data.synonyms', 'drug_atc_codes', 'drug_atc_codes_level_4', 'drug_atc_codes_level_3', 'drug_atc_codes_level_2', 'drug_atc_codes_level_1', 'parent_molecule.molecule_chembl_id'] browser_table: default: ['parent_molecule.molecule_chembl_id', 'parent_molecule.pref_name', 'parent_molecule.molecule_type', 'mechanism_of_action.max_phase', 'parent_molecule.first_approval', 'parent_molecule.usan_stem', 'target.target_chembl_id', 'target.pref_name', 'mechanism_of_action.action_type', 'target.target_type', 'target.organism', 'binding_site.site_name', 'mechanism_of_action.mechanism_refs'] optional: ['mechanism_of_action.mechanism_comment', 'mechanism_of_action.selectivity_comment', 'mechanism_of_action.binding_site_comment', 'parent_molecule._metadata.drug.drug_data.synonyms', 'drug_atc_codes', 'drug_atc_codes_level_4', 'drug_atc_codes_level_3', 'drug_atc_codes_level_2', 'drug_atc_codes_level_1'] report_card_table: default: ['mechanism_of_action.action_type', 'target.target_chembl_id', 'target.pref_name', 'target.target_type', 'target.organism', 'binding_site.site_name', 'mechanism_of_action.mechanism_refs'] target_report_card_table: default: ['parent_molecule.molecule_chembl_id', 'parent_molecule.pref_name', 'parent_molecule.molecule_type', 'mechanism_of_action.max_phase', 'parent_molecule.first_approval', 'parent_molecule.usan_stem', 'mechanism_of_action.mechanism_refs'] chembl_activity: download: default: ['molecule_chembl_id', 'molecule_pref_name', '_metadata.parent_molecule_data.max_phase', '_metadata.parent_molecule_data.full_mwt', '_metadata.parent_molecule_data.num_ro5_violations', '_metadata.parent_molecule_data.alogp', '_metadata.parent_molecule_data.compound_key', 'canonical_smiles', 'standard_type', 'standard_relation', 'standard_value', 'standard_units', 'pchembl_value', 'data_validity_comment', 'activity_comment', 'uo_units', 'ligand_efficiency.bei', 'ligand_efficiency.le', 'ligand_efficiency.lle', 'ligand_efficiency.sei', 'potential_duplicate', 'assay_chembl_id', 'assay_description', 'assay_type', 'bao_format', 'bao_label', '_metadata.assay_data.assay_organism', '_metadata.assay_data.tissue_chembl_id', '_metadata.assay_data.assay_tissue', '_metadata.assay_data.assay_cell_type', '_metadata.assay_data.assay_subcellular_fraction', '_metadata.assay_data.assay_parameters', 'assay_variant_accession', 'assay_variant_mutation', 'target_chembl_id', 'target_pref_name', 'target_organism', '_metadata.target_data.target_type', 'document_chembl_id', 'src_id', '_metadata.source.src_description', 'document_journal', 'document_year', '_metadata.assay_data.cell_chembl_id', 'activity_properties'] browser_table: default: ['molecule_chembl_id', '_metadata.parent_molecule_data.compound_key', 'standard_type', 'standard_relation', 'standard_value', 'standard_units', 'pchembl_value', 'activity_comment', 'assay_chembl_id', 'assay_description', 'bao_label', '_metadata.assay_data.assay_organism', 'target_chembl_id', 'target_pref_name', 'target_organism', '_metadata.target_data.target_type', 'document_chembl_id', '_metadata.source.src_description', '_metadata.assay_data.cell_chembl_id'] optional: ['molecule_pref_name', '_metadata.parent_molecule_data.max_phase', '_metadata.parent_molecule_data.full_mwt', '_metadata.parent_molecule_data.num_ro5_violations', '_metadata.parent_molecule_data.alogp', 'canonical_smiles', 'data_validity_comment', 'uo_units', 'ligand_efficiency.bei', 'ligand_efficiency.le', 'ligand_efficiency.lle', 'ligand_efficiency.sei', 'potential_duplicate', 'assay_type', 'bao_format', '_metadata.assay_data.tissue_chembl_id', '_metadata.assay_data.assay_tissue', '_metadata.assay_data.assay_cell_type', '_metadata.assay_data.assay_subcellular_fraction', '_metadata.assay_data.assay_parameters', 'assay_variant_accession', 'assay_variant_mutation', 'src_id', 'document_journal', 'document_year', 'activity_properties'] chembl_drug_warning_by_parent: report_card_table: default: ['drug_warning.warning_type', 'drug_warning.warning_class', 'drug_warning.warning_description', 'drug_warning.where', 'drug_warning.warning_refs'] browser_table: default: [ 'drug_warning.molecule_chembl_id', 'drug_warning.parent_molecule_chembl_id', 'drug_warning.warning_type', 'drug_warning.warning_class', 'drug_warning.warning_description', 'drug_warning.where', 'drug_warning.warning_refs' ] download: default: [ 'drug_warning.molecule_chembl_id', 'drug_warning.parent_molecule_chembl_id', 'drug_warning.warning_type', 'drug_warning.warning_class', 'drug_warning.warning_description', 'drug_warning.where', 'drug_warning.warning_refs' ] querystring: default: [ 'drug_warning.molecule_chembl_id', 'drug_warning.parent_molecule_chembl_id', 'drug_warning.warning_type', 'drug_warning.warning_class', 'drug_warning.warning_description', 'drug_warning.where.country', 'drug_warning.where.year', 'drug_warning.warning_refs.ref_url', 'drug_warning.warning_refs.ref_type', 'drug_warning.warning_refs.ref_id']