Commit 4f88b053 authored by carlosribas's avatar carlosribas
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Improve Galaxy help page and add it to Help sidebar

parent 1d607a61
# <i class="fa fa-gears"></i> Galaxy workflows
# <i class="fa fa-gears"></i> Galaxy workflows for RNA-seq analysis
The following Galaxy workflows demonstrate how RNAcentral data can be used for differential expression analysis of RNA-seq datasets.
## Example Galaxy workflow
## Single-end RNA-seq workflow
Follow **Support Protocol 3** in the [RNAcentral paper](https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpbi.104) in *Current Protocols for Bioinformatics* for a step-by-step example showing how to use the [Galaxy](https://usegalaxy.org) platform and RNAcentral annotations to perform differential expression analysis of RNA-seq datasets from *Drosophila melanogaster*.
![Galaxy workflow](https://currentprotocols.onlinelibrary.wiley.com/cms/asset/c23e37ab-6953-4e71-933a-c90cff7d3363/cpbi104-fig-0014-m.jpg)
## Single-end and paired-end workflows
In addition, the following [Galaxy](https://usegalaxy.org) workflows demonstrate how RNAcentral data can be used for differential expression analysis of RNA-seq datasets.
### Single-end RNA-seq workflow
- [Galaxy workflow](https://usegalaxy.org/u/rnacentral/w/current-protocols-workflow)
- [Galaxy history](https://usegalaxy.org/u/rnacentral/h/rnacentral-cpb-protocol)
## Paired-end RNA-seq workflow
### Paired-end RNA-seq workflow
- [Galaxy workflow](https://usegalaxy.org/u/rnacentral/w/rnacentral-paired-end-example)
- [Galaxy history](https://usegalaxy.org/u/rnacentral/h/rnacentral-paired-end-example)
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<li><a href="{% url 'sequence-search-api' %}">Sequence search API <span class="label label-success">New</span></a></li>
<li><a href="{% url 'api-docs' %}">API documentation</a></li>
<li><a href="{% url 'help-public-database' %}">Public Postgres database</a></li>
<li><a href="{% url 'help-galaxy' %}">Galaxy workflows for RNA-seq analysis</a></li>
<strong>Functional annotations</strong>
<li><a href="{% url 'help-genomic-mapping' %}">Genomic mapping</a></li>
<li><a href="{% url 'help-secondary-structure' %}">Secondary structure <span class="label label-success">New<span></a></li>
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