Unverified Commit d63dd19b authored by Carlos Eduardo Ribas's avatar Carlos Eduardo Ribas Committed by GitHub
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Merge branch 'master' into release-16

parents 1a71ab3b be1ea3aa
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RNAcentral generates secondary structure (2D) diagrams using
the [R2DT](https://github.com/RNAcentral/R2DT) software that
visualises RNA structure using standard layouts or templates (*manuscript in preparation*).
visualises RNA structure using standard layouts or templates.
Learn more in the [R2DT preprint](https://www.biorxiv.org/content/10.1101/2020.09.10.290924v1)
<iframe width="560" height="315" src="https://www.youtube.com/embed/La7HA8i_h5I" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
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......@@ -82,6 +82,14 @@ Use parentheses to group and nest logical terms.
---
## RNAcentral CPB protocol
Our latest article describes different ways of accessing the data.
<a href='https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpbi.104#cpbi104-fig-0003' class="btn btn-primary" target="_blank">See the text search section</a>
---
## About RNAcentral search <a style="cursor: pointer" id="ebi-search" ng-click="scrollTo('ebi-search')" name="ebi-search" class="text-muted smaller"><i class="fa fa-link"></i></a>
RNAcentral is powered by the [EBI search](http://www.ebi.ac.uk/ebisearch/),
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......@@ -22,6 +22,13 @@ Watch a recording of an online webinar to see RNAcentral in action:
RNAcentral has been described in several papers:
<blockquote class="callout-info">
<p>Exploring non‐coding RNAs in RNAcentral</p>
<footer>Sweeney, B. A., Tagmazian, A. A., Ribas, C. E., Finn, R. D., Bateman, A., & Petrov, A. I., 2020</footer>
<footer><em>Current Protocols in Bioinformatics</em></footer>
<a href="https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpbi.104">CPB</a>
</blockquote>
<blockquote>
<p>RNAcentral: a hub of information for non-coding RNA sequences</p>
<footer>The RNAcentral Consortium, 2019</footer>
<footer><em>Nucleic Acids Research (Database issue)</em></footer>
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......@@ -187,7 +187,7 @@ RNAcentral: The non-coding RNA sequence database
</ul>
<p class="margin-top-5px">
Try the new RNAcentral <a href="{% url 'sequence-search' %}">sequence search</a>, <a href="/search?q=has_secondary_structure:%22True%22">browse secondary structures</a>, or read about the <a href="https://blog.rnacentral.org">new member databases</a> on the blog.
<span class="label label-success">New</span> Read new RNAcentral paper in <a href="https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpbi.104" target="_blank">Current Protocols in Biodinformatics</a>
</p>
</div>
</div>
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......@@ -20,8 +20,9 @@
{% block content %}
<h1><i class="fa fa-search"></i> R2DT</h1>
<p class="lead">Visualise RNA secondary structure in standard orientations using RNA 2D Templates (R2DT)
<br /><a href="https://github.com/RNAcentral/R2DT" target="_blank" class="no-icon">Learn more →</a>
<p class="lead">
Visualise RNA secondary structure in standard orientations using RNA 2D Templates (R2DT).
<br>Learn more in the <a href="https://www.biorxiv.org/content/10.1101/2020.09.10.290924v1" target="_blank">R2DT preprint</a>
</p>
<r2dt-web
examples='[
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......@@ -38,6 +38,7 @@
"h3Color": "#BF8E3E",
"facetColor": "#BF8E3E",
"hideRnacentral": "true",
"urlWithJobId": "true",
"trackingID": "UA-51212613-1"
}'
/>
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