'description':'comparative sequence and structure information for ribosomal, intron, and other RNAs',
'hint':'CRW Site comparative sequence and structure information for ribosomal, intron, and other RNAs',
'tags':['curated','rRNA'],
'name':'CRW',
'label':'crw',
'url':'http://crw-site.chemistry.gatech.edu/',
'description':'provides comparative sequence and structure information for ribosomal, intron, and other RNAs',
'hint':'CRW provides comparative sequence and structure information for ribosomal, intron, and other RNAs',
'tags':['curated','SSU rRNA','5S rRNA'],
'abbreviation':'Comparative RNA Website',
'examples':'',
'references':[],
'imported':False,
'status':'',
'examples':[
{'upi':'URS0001BCA6C0','taxid':562},# E.coli SSU
{'upi':'URS0001BCA4A9','taxid':9606},# Human SSU
{'upi':'URS0001BCA572','taxid':9606},# Human 5S
],
'references':[
{
'title':'The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs',
'authors':'Jamie J Cannone, Sankar Subramanian, Murray N Schnare, James R Collett, Lisa M DSouza, Yushi Du, Brian Feng, Nan Lin, Lakshmi V Madabusi, Kirsten M Muller, Nupur Pande, Zhidi Shang, Nan Yu, Robin R Gutell',
'title':'Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species',
'authors':'Lauren M Lui, Andrew V Uzilov, David L Bernick, Andrea Corredor, Todd M Lowe, Patrick P Dennis',
'journal':'Nucleic Acids Res. 2018 Jun 20;46(11):5678-5691',
'pubmed_id':'29771354',
},
{
'title':'Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species',
'authors':'David L Bernick, Patrick P Dennis, Lauren M Lui, Todd M Lowe',
'journal':'Front Microbiol. 2012 Jul 2;3:231',
'pubmed_id':'22783241',
},
{
'title':'Complete genome sequence of Pyrobaculum oguniense',
'authors':'David L Bernick, Kevin Karplus, Lauren M Lui, Joanna K C Coker, Julie N Murphy, Patricia P Chan, Aaron E Cozen, Todd M Lowe',
'description':'is an integrated database of human diseases and their annotations',
'hint':'MalaCards is an integrated database of human diseases and their annotations',
'description':'integrates manually-curated and text-mining sources to associate genes, including ncRNAs, with diseases, and lists the supporting evidence',
'hint':'MalaCards integrates manually-curated and text-mining sources to associate genes, including ncRNAs, with diseases, and lists the supporting evidence',
'tags':['disease','human'],
'abbreviation':'',
'examples':[
...
...
@@ -1234,7 +1280,7 @@ expert_dbs = [
},
],
'imported':True,
'status':'new',
'status':'',
'version':'4.12',
},
{
...
...
@@ -1259,8 +1305,8 @@ expert_dbs = [
},
],
'imported':True,
'status':'new',
'version':'4.12',
'status':'',
'version':'4.14',
},
{
'name':'CRS',
...
...
@@ -1283,8 +1329,8 @@ expert_dbs = [
},
],
'imported':True,
'status':'',
'version':'2.0',
'status':'updated',
'version':'2.1',
},
{
'name':'IntAct',
...
...
@@ -1308,7 +1354,46 @@ expert_dbs = [
},
],
'imported':True,
'status':'',
'version':'',
},
{
'name':'ZFIN',
'label':'zfin',
'url':'https://zfin.org',
'description':'is the database of genetic and genomic data for the zebrafish (Danio rerio) as a model organism',
'hint':'The Zebrafish Information Network (ZFIN) is the database of genetic and genomic data for the zebrafish (Danio rerio) as a model organism',
'tags':['curated','model organism','zebrafish'],
'abbreviation':'The Zebrafish Information Network',
'title':'The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources',
'authors':'Leyla Ruzicka, Douglas G Howe, Sridhar Ramachandran, Sabrina Toro, Ceri E Van Slyke, Yvonne M Bradford, Anne Eagle, David Fashena, Ken Frazer, Patrick Kalita, Prita Mani, Ryan Martin, Sierra Taylor Moxon, Holly Paddock, Christian Pich, Kevin Schaper, Xiang Shao, Amy Singer, Monte Westerfield',
'journal':'Nucleic Acids Res. 2019 Jan 8;47(D1):D867-D873',
'pubmed_id':'30407545',
},
],
'imported':True,
'status':'new',
'version':'',
},
{
'name':'snoRNA Atlas',
'label':'snoatlas',
'url':'http://snoatlas.bioinf.uni-leipzig.de/',
'description':'',
'hint':'snoRNA Atlas is a database of human snoRNAs',
