GitLab

For some reason installing these pages later in the dockerfile causes it
to fail on my machine. Moving it to the front of the file seems to fix
this.

to facilitate testing of bed and bigbed export

Moving to postgres instead of Oracle, so I'm replacing the dependency on
oracle. In addition, I'm stripping it from the Dockerfile and the env
template. I have also altered the local_settings_default.py file to show
the new fields that have to be filled out to connect, and removed the
unsupported 'threaded' option.

Note, that this probably does not handle the exporting scripts as some
of those scripts refer directly to cx_oracle and oracle specific things.
That can be fixed later as this is enough to start working with.

upgrades pip so that packages can be installed from behind a proxy

also upgrade markdown dependencies because they require a newer python

the setup is similar to the production servers