diff --git a/js/script.js b/js/script.js
index 449381c28cdbc3a7d9ac3193f42beacedbfa3889..739ab30f2033006a9f4f28a240c2e881dbc2376b 100644
--- a/js/script.js
+++ b/js/script.js
@@ -1,199 +1,196 @@
/* Copyright (c) EMBL-EBI 2017 */
-(function fixes() {
- // mark pdf/doc/txt links with link-pdf/link-doc/link-txt classes
- // exclude links with images
- // include only links to own domains
- (function externalLinks() {
- function isOwnDomain(url) {
- return (url.indexOf('//') === -1 ||
- url.indexOf('//www.ebi.ac.uk') !== -1 ||
- url.indexOf('//wwwdev.ebi.ac.uk') !== -1 ||
- url.indexOf('//srs.ebi.ac.uk') !== -1 ||
- url.indexOf('//ftp.ebi.ac.uk') !== -1 ||
- url.indexOf('//intranet.ebi.ac.uk') !== -1 ||
- url.indexOf('//pdbe.org') !== -1 ||
- url.indexOf('//' + document.domain) !== -1);
- }
- function isFileType(url, type) {
- return url.indexOf(type, url.length-type.length)!==-1;
- }
- try {
- var alist = document.getElementsByTagName('a');
- var fileTypes = ['pdf', 'doc', 'txt'];
- var i, icon;
- for (i=0; i<alist.length; i++) {
- for (var type in fileTypes) {
- if (alist[i].innerHTML.indexOf('<span class="link-' + fileTypes[type] + '"></span>') === -1 && alist[i].innerHTML.indexOf('<img') === -1 && isFileType(alist[i].href, fileTypes[type]) && isOwnDomain(alist[i].href)) {
- icon = document.createElement('span');
- icon.className = 'link-' + fileTypes[type];
- alist[i].appendChild(icon);
- }
+// mark pdf/doc/txt links with link-pdf/link-doc/link-txt classes
+// exclude links with images
+// include only links to own domains
+function ebiFrameworkExternalLinks() {
+ function isOwnDomain(url) {
+ return (url.indexOf('//') === -1 ||
+ url.indexOf('//www.ebi.ac.uk') !== -1 ||
+ url.indexOf('//wwwdev.ebi.ac.uk') !== -1 ||
+ url.indexOf('//srs.ebi.ac.uk') !== -1 ||
+ url.indexOf('//ftp.ebi.ac.uk') !== -1 ||
+ url.indexOf('//intranet.ebi.ac.uk') !== -1 ||
+ url.indexOf('//pdbe.org') !== -1 ||
+ url.indexOf('//' + document.domain) !== -1);
+ }
+ function isFileType(url, type) {
+ return url.indexOf(type, url.length-type.length)!==-1;
+ }
+ try {
+ var alist = document.getElementsByTagName('a');
+ var fileTypes = ['pdf', 'doc', 'txt'];
+ var i, icon;
+ for (i=0; i<alist.length; i++) {
+ for (var type in fileTypes) {
+ if (alist[i].innerHTML.indexOf('<span class="link-' + fileTypes[type] + '"></span>') === -1 && alist[i].innerHTML.indexOf('<img') === -1 && isFileType(alist[i].href, fileTypes[type]) && isOwnDomain(alist[i].href)) {
+ icon = document.createElement('span');
+ icon.className = 'link-' + fileTypes[type];
+ alist[i].appendChild(icon);
}
}
}
- catch(err) {}
- })();
+ }
+ catch(err) {}
+}
- // Disable the global search if a page defines a local search.
- // Can also be disable by adding class 'no-global-search' to the body element.
- (function manageGlobalSearch() {
- try {
- var hasLocalSearch = document.getElementById('local-search') !== null;
- var hasLocalEBISearch = document.getElementById('ebi_search') !== null;
- if (hasLocalSearch || hasLocalEBISearch) {
- document.body.className += ' no-global-search';
- } else {
- // If the page gets a global search, we specify how the dropdown box should be. #RespectMyAuthoriti
- var html = '<form id="global-search" name="global-search" action="/ebisearch/search.ebi" method="GET" class="large-8 large-push-2">' +
- '<fieldset>' +
- '<div class="input-group">' +
- '<input type="text" name="query" id="global-searchbox" class="input-group-field" placeholder="Search all of EMBL-EBI">' +
- '<div class="input-group-button">' +
- '<input type="submit" name="submit" value="Search" class="button">' +
- '<input type="hidden" name="db" value="allebi" checked="checked">' +
- '<input type="hidden" name="requestFrom" value="masthead-black-bar" checked="checked">' +
- '</div>' +
+// Disable the global search if a page defines a local search.
+// Can also be disable by adding class 'no-global-search' to the body element.
+function ebiFrameworkManageGlobalSearch() {
+ try {
+ var hasLocalSearch = document.getElementById('local-search') !== null;
+ var hasLocalEBISearch = document.getElementById('ebi_search') !== null;
+ if (hasLocalSearch || hasLocalEBISearch) {
+ document.body.className += ' no-global-search';
+ } else {
+ // If the page gets a global search, we specify how the dropdown box should be. #RespectMyAuthoriti
+ var html = '<form id="global-search" name="global-search" action="/ebisearch/search.ebi" method="GET" class="large-8 large-push-2">' +
+ '<fieldset>' +
+ '<div class="input-group">' +
+ '<input type="text" name="query" id="global-searchbox" class="input-group-field" placeholder="Search all of EMBL-EBI">' +
+ '<div class="input-group-button">' +
+ '<input type="submit" name="submit" value="Search" class="button">' +
+ '<input type="hidden" name="db" value="allebi" checked="checked">' +
+ '<input type="hidden" name="requestFrom" value="masthead-black-bar" checked="checked">' +
'</div>' +
- '</fieldset>' +
- '</form>';
- try {
- var gloablSearch = document.getElementById('search-global-dropdown');
- gloablSearch.innerHTML = html;
- } catch (err) {
- setTimeout(init, 500);
- }
+ '</div>' +
+ '</fieldset>' +
+ '</form>';
+ try {
+ var gloablSearch = document.getElementById('search-global-dropdown');
+ gloablSearch.innerHTML = html;
+ } catch (err) {
+ setTimeout(init, 500);
}
}
- catch (err) {}
- })();
+ }
+ catch (err) {}
+}
- // Add error alerts for 'no input' on search boxes.
- // Todo: this, perhaps, shoule be moved to a value-add script file
- (function searchNullError() {
- try {
- var disabled = document.body.className.indexOf('no-search-error') !== -1;
- // Array of search box definition objects, specify inputNode, defaultText (optional, default ''), errorText (optional, default 'Please enter a search term')
- var searchBoxes = [
- { inputNode: document.getElementById('global-searchbox') }, // in global masthead
- { inputNode: document.getElementById('local-searchbox') }, // in local masthead
- { inputNode: document.body.className.indexOf('front') !== -1 ? document.getElementById('query') : null }, // on home page
- { inputNode: document.getElementById('people-groups') ? document.getElementById('people-groups').getElementsByTagName('input')[0] : null } // on people and group page
- ];
+// Add error alerts for 'no input' on search boxes.
+// Todo: this, perhaps, shoule be moved to a value-add script file
+function ebiFrameworkSearchNullError() {
+ try {
+ var disabled = document.body.className.indexOf('no-search-error') !== -1;
+ // Array of search box definition objects, specify inputNode, defaultText (optional, default ''), errorText (optional, default 'Please enter a search term')
+ var searchBoxes = [
+ { inputNode: document.getElementById('global-searchbox') }, // in global masthead
+ { inputNode: document.getElementById('local-searchbox') }, // in local masthead
+ { inputNode: document.body.className.indexOf('front') !== -1 ? document.getElementById('query') : null }, // on home page
+ { inputNode: document.getElementById('people-groups') ? document.getElementById('people-groups').getElementsByTagName('input')[0] : null } // on people and group page
+ ];
- if (!disabled) {
- for (searchBox in searchBoxes) {
- var searchInput = searchBoxes[searchBox].inputNode;
- var searchForm = (searchInput) ? searchInput.form : null;
- var searchInputDefault = searchBoxes[searchBox].defaultText || '';
- var searchError = searchBoxes[searchBox].errorText || 'Please enter a search term';
- var searchAction = (searchForm) ? searchForm.action : '';
- var isEbiSearch = searchAction.indexOf('/ebisearch/') !== -1;
+ if (!disabled) {
+ for (searchBox in searchBoxes) {
+ var searchInput = searchBoxes[searchBox].inputNode;
+ var searchForm = (searchInput) ? searchInput.form : null;
+ var searchInputDefault = searchBoxes[searchBox].defaultText || '';
+ var searchError = searchBoxes[searchBox].errorText || 'Please enter a search term';
+ var searchAction = (searchForm) ? searchForm.action : '';
+ var isEbiSearch = searchAction.indexOf('/ebisearch/') !== -1;
- if (searchForm && searchInput && isEbiSearch) {
- // add reference to other items for onsubmit anonymous function
- searchForm.searchInput = searchInput;
- searchForm.searchInputDefault = searchInputDefault;
- searchForm.searchError = searchError;
+ if (searchForm && searchInput && isEbiSearch) {
+ // add reference to other items for onsubmit anonymous function
+ searchForm.searchInput = searchInput;
+ searchForm.searchInputDefault = searchInputDefault;
+ searchForm.searchError = searchError;
- searchForm.onsubmit = function() {
- searchInput = this.searchInput;
- searchInputDefault = this.searchInputDefault;
- searchError = this.searchError;
+ searchForm.onsubmit = function() {
+ searchInput = this.searchInput;
+ searchInputDefault = this.searchInputDefault;
+ searchError = this.searchError;
- // Ensure input is trimmed
- searchInput.value = searchInput.value.trim();
+ // Ensure input is trimmed
+ searchInput.value = searchInput.value.trim();
- if (searchInput.value === searchInputDefault || searchInput.value === '') {
- alert(searchError);
- return false;
- }
- };
+ if (searchInput.value === searchInputDefault || searchInput.value === '') {
+ alert(searchError);
+ return false;
+ }
+ };
- }
}
}
}
- catch (err) {}
- })();
+ }
+ catch (err) {}
+}
- // Remove global-nav/global-nav-expanded from header/footer
- // if body.no-global-nav is set
- (function hideGlobalNav() {
- try {
- var hasGlobalMasthead = document.getElementById('masthead-black-bar') !== null;
- var disabled = document.body.className.indexOf('no-global-nav') !== -1;
- var elem;
+// Remove global-nav/global-nav-expanded from header/footer
+// if body.no-global-nav is set
+function ebiFrameworkHideGlobalNav() {
+ try {
+ var hasGlobalMasthead = document.getElementById('masthead-black-bar') !== null;
+ var disabled = document.body.className.indexOf('no-global-nav') !== -1;
+ var elem;
- if (hasGlobalMasthead && disabled) {
- if ((elem=document.getElementById('global-nav')) !== null) {
- elem.parentNode.removeChild(elem);
- }
- if ((elem=document.getElementById('global-nav-expanded')) !== null) {
- elem.parentNode.removeChild(elem);
- }
+ if (hasGlobalMasthead && disabled) {
+ if ((elem=document.getElementById('global-nav')) !== null) {
+ elem.parentNode.removeChild(elem);
+ }
+ if ((elem=document.getElementById('global-nav-expanded')) !== null) {
+ elem.parentNode.removeChild(elem);
}
}
- catch (err) {}
- })();
-
- // Assign global nav background images through meta tags
- (function assignImageByMetaTags() {
- var masthead = document.getElementById('masthead');
- // check for both ebi: and ebi- formatted meta tags
- var mastheadColor = document.querySelector("meta[name='ebi:masthead-color']") || document.querySelector("meta[name='ebi-masthead-color']");
- var mastheadImage = document.querySelector("meta[name='ebi:masthead-image']") || document.querySelector("meta[name='ebi-masthead-image']");
+ }
+ catch (err) {}
+}
- if (mastheadColor != null) {
- masthead.style.backgroundColor = mastheadColor.getAttribute("content");
- masthead.className += ' meta-background-color';
- }
- if (mastheadImage != null) {
- masthead.style.backgroundImage = 'url(' + mastheadImage.getAttribute("content") + ')';
- masthead.className += ' meta-background-image';
- }
- })();
+// Assign global nav background images through meta tags
+function ebiFrameworkAssignImageByMetaTags() {
+ var masthead = document.getElementById('masthead');
+ // check for both ebi: and ebi- formatted meta tags
+ var mastheadColor = document.querySelector("meta[name='ebi:masthead-color']") || document.querySelector("meta[name='ebi-masthead-color']");
+ var mastheadImage = document.querySelector("meta[name='ebi:masthead-image']") || document.querySelector("meta[name='ebi-masthead-image']");
- // Insert EMBL dropdown menu
- (function insertEMBLdropdown() {
+ if (mastheadColor != null) {
+ masthead.style.backgroundColor = mastheadColor.getAttribute("content");
+ masthead.className += ' meta-background-color';
+ }
+ if (mastheadImage != null) {
+ masthead.style.backgroundImage = 'url(' + mastheadImage.getAttribute("content") + ')';
+ masthead.className += ' meta-background-image';
+ }
+}
- try {
- // remove any current dropdown
- if ((elem=document.getElementById('embl-dropdown')) !== null) {
- document.getElementById('embl-dropdown').remove();
- }
+ // Insert EMBL dropdown menu
+function ebiFrameworkInsertEMBLdropdown() {
+ try {
+ // remove any current dropdown
+ if ((elem=document.getElementById('embl-dropdown')) !== null) {
+ document.getElementById('embl-dropdown').remove();
+ }
- var dropdownDiv = document.createElement("div");
- dropdownDiv.innerHTML = '<div id="embl-dropdown" class="embl-dropdown dropdown-pane bottom" data-dropdown>' +
- '<p>EMBL-EBI in Hinxton is one of five EMBL locations across europe.<br/> <a href="//www.ebi.ac.uk/about" class="small readmore">More about EMBL-EBI</a></p>' +
- '<h6>Connect to another EMBL location</h6>' +
- '<div class="small-collapse small-up-2 padding-bottom-large clearfix">' +
- '<div class="column padding-bottom-medium">' +
- '<a href="http://www.embl.fr/" class="">Grenoble</a>' +
- '<div class="small">Structural Biology</div>' +
- '</div>' +
- '<div class="column padding-bottom-medium">' +
- '<a href="http://www.embl-hamburg.de/" class="">Hamburg</a>' +
- '<div class="small">Structural Biology</div>' +
- '</div>' +
- '<div class="column padding-bottom-medium">' +
- '<a href="http://www.embl.de/" class="">Heidelberg</a>' +
- '<div class="small">Main Laboratory</div>' +
- '</div>' +
- '<div class="column padding-bottom-medium">' +
- '<a href="http://www.embl.it/" class="">Monterotondo</a>' +
- '<div class="small">Mouse Biology</div>' +
- '</div>' +
+ var dropdownDiv = document.createElement("div");
+ dropdownDiv.innerHTML = '<div id="embl-dropdown" class="embl-dropdown dropdown-pane bottom" data-dropdown>' +
+ '<p>EMBL-EBI in Hinxton is one of five EMBL locations across europe.<br/> <a href="//www.ebi.ac.uk/about" class="small readmore">More about EMBL-EBI</a></p>' +
+ '<h6>Connect to another EMBL location</h6>' +
+ '<div class="small-collapse small-up-2 padding-bottom-large clearfix">' +
+ '<div class="column padding-bottom-medium">' +
+ '<a href="http://www.embl.fr/" class="">Grenoble</a>' +
+ '<div class="small">Structural Biology</div>' +
'</div>' +
- '<p><a href="http://embl.org/" class="button readmore">Or learn more about EMBL</a></p>' +
- '</div>';
- document.getElementById("masthead-black-bar").appendChild(dropdownDiv);
- // We don't invoke the dropdown here, as that method depends on how you're using the Framework
- }
- catch(err) {};
- })();
-})();
+ '<div class="column padding-bottom-medium">' +
+ '<a href="http://www.embl-hamburg.de/" class="">Hamburg</a>' +
+ '<div class="small">Structural Biology</div>' +
+ '</div>' +
+ '<div class="column padding-bottom-medium">' +
+ '<a href="http://www.embl.de/" class="">Heidelberg</a>' +
+ '<div class="small">Main Laboratory</div>' +
+ '</div>' +
+ '<div class="column padding-bottom-medium">' +
+ '<a href="http://www.embl.it/" class="">Monterotondo</a>' +
+ '<div class="small">Mouse Biology</div>' +
+ '</div>' +
+ '</div>' +
+ '<p><a href="http://embl.org/" class="button readmore">Or learn more about EMBL</a></p>' +
+ '</div>';
+ document.getElementById("masthead-black-bar").appendChild(dropdownDiv);
+ // We don't invoke the dropdown here, as that method depends on how you're using the Framework
+ }
+ catch(err) {};
+}
-(function updateFoot() {
+function ebiFrameworkUpdateFoot() {
var html = '<div class="columns small-6 medium-2 ">' +
'<a href="//www.ebi.ac.uk" title="EMBL-EBI"><span class="ebi-logo"></span></a>' +
'</div>' +
@@ -220,9 +217,9 @@
}
}
init();
-})();
+}
-(function updateFooterMeta() {
+function ebiFrameworkUpdateFooterMeta() {
var d = new Date();
var html = '<div class="columns">' +
'<p class="address">EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK. +44 (0)1223 49 44 44</p> <p class="legal">Copyright © EMBL-EBI ' + d.getFullYear() + ' | EMBL-EBI is <a href="http://www.embl.org/">part of the European Molecular Biology Laboratory</a> | <a href="//www.ebi.ac.uk/about/terms-of-use">Terms of use</a>' +
@@ -236,11 +233,11 @@
} catch (err) { setTimeout(init, 500); }
}
init();
-})();
-(function includeScripts() {
+}
+
+function ebiFrameworkIncludeScripts() {
var requireScripts = ['//www.ebi.ac.uk/web_guidelines/EBI-Framework/v1.2/js/script.js', // make sure we have script.js from where we expect
'//www.ebi.ac.uk/web_guidelines/js/downtime.js?' + Math.round(new Date().getTime() / 3600000)]; // refresh downtime.js once an hour
-
function init() {
try {
var existingScripts = document.getElementsByTagName('script');
@@ -261,10 +258,10 @@
} catch (err) { setTimeout(init, 500); }
}
init();
-})();
+}
-(function cookieBanner() {
- function setCookie(c_name, value, exdays) {
+function ebiFrameworkCookieBanner() {
+ function setCookie(c_name, value, exdays) {
var exdate = new Date();
var c_value;
exdate.setDate(exdate.getDate() + exdays);
@@ -331,4 +328,19 @@
catch(err) { setTimeout(init, 100); }
}
init();
-})();
+}
+
+function ebiFrameworkInvokeScriptJS() {
+ ebiFrameworkExternalLinks();
+ ebiFrameworkManageGlobalSearch();
+ ebiFrameworkSearchNullError();
+ ebiFrameworkHideGlobalNav();
+ ebiFrameworkAssignImageByMetaTags();
+ ebiFrameworkInsertEMBLdropdown();
+ ebiFrameworkUpdateFoot();
+ ebiFrameworkUpdateFooterMeta();
+ ebiFrameworkIncludeScripts();
+ ebiFrameworkCookieBanner();
+}
+
+ebiFrameworkInvokeScriptJS(); // init