Unverified Commit 9b009d20 authored by Dmitry Smirnov's avatar Dmitry Smirnov Committed by GitHub

Update README.md

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# readtools
## ENA read tools
* Typical cramtools usage in processing:
#### Typical cramtools usage in processing:
cram dump: java -XX:+UseSerialGC -Xmx10G -Dsamjdk.use_cram_ref_download=true -Djava.io.tmpdir="/var/tmp" -cp readtools.jar uk.ac.ebi.ena.readtools.cram.CramTools fastq --reverse --gzip $@
cram stats: java -XX:+UseSerialGC -Xmx4G -cp readtools.jar uk.ac.ebi.ena.readtools.cram.CramTools bam -c -F 2304 -I $@
* cram dump:
java -XX:+UseSerialGC -Xmx10G -Dsamjdk.use_cram_ref_download=true -Djava.io.tmpdir="/var/tmp" -cp readtools.jar uk.ac.ebi.ena.readtools.cram.CramTools fastq --reverse --gzip $@
* cram stats:
java -XX:+UseSerialGC -Xmx4G -cp readtools.jar uk.ac.ebi.ena.readtools.cram.CramTools bam -c -F 2304 -I $@
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