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  1. 25 Jan, 2021 2 commits
  2. 23 Jan, 2021 1 commit
    • M. Haseeb's avatar
      ENA-3431 · da63d409
      M. Haseeb authored
      - added timeboxed valdiation support for SAM and Fastq formats.
      da63d409
  3. 15 Jan, 2021 1 commit
    • M. Haseeb's avatar
      ENA-4123 · c692e5fd
      M. Haseeb authored
      - added a small utility to check if bam files have reverse reads in them.
      - updated year text in the license text.
      c692e5fd
  4. 14 Jan, 2021 5 commits
  5. 17 Dec, 2020 1 commit
  6. 09 Dec, 2020 2 commits
  7. 04 Dec, 2020 2 commits
  8. 02 Dec, 2020 2 commits
  9. 30 Nov, 2020 1 commit
  10. 30 Oct, 2020 1 commit
    • M. Haseeb's avatar
      ENA-3934 · 616fc39d
      M. Haseeb authored
      - added the ability to find and return total read and base count in Fastq2Sam.
      616fc39d
  11. 27 Oct, 2020 1 commit
    • M. Haseeb's avatar
      ENA-4020 · d0209e32
      M. Haseeb authored
      - removed picard from dependency as the version of htsjdk it pulled was causing issues in another project.
      d0209e32
  12. 19 Oct, 2020 1 commit
  13. 16 Oct, 2020 1 commit
    • M. Haseeb's avatar
      ENA-3950 · 375c6982
      M. Haseeb authored
      - allowed U base character in read validation.
      - added the ability convert U bases to T during fastq to BAM conversion.
      375c6982
  14. 15 Oct, 2020 11 commits
  15. 29 Sep, 2020 1 commit
  16. 27 Sep, 2020 1 commit
    • M. Haseeb's avatar
      ENA-3950 · 0281e3be
      M. Haseeb authored
      - Updated DataSpot class to throw a proper invalid base character exception so calling code can easily handle it.
      - Some improvements to previously added code.
      0281e3be
  17. 19 Sep, 2020 3 commits
    • M. Haseeb's avatar
      ENA-3943 · 3549a3df
      M. Haseeb authored
      - fixed a test.
      3549a3df
    • M. Haseeb's avatar
      ENA-3943 · cf1afca6
      M. Haseeb authored
      - updated constructors in Fastq2Sam.
      cf1afca6
    • M. Haseeb's avatar
      ENA-3943 · 162d484c
      M. Haseeb authored
      - added api docs.
      162d484c
  18. 18 Sep, 2020 2 commits
    • M. Haseeb's avatar
      ENA-3943 · 7a1c5e88
      M. Haseeb authored
      - updated version number.
      7a1c5e88
    • M. Haseeb's avatar
      ENA-3943 · 322633cb
      M. Haseeb authored
      - added support for accepting temp directory argument in Fastq2Sam.
      - added a picard argument to skip (ignore) blank lines.
      322633cb
  19. 14 Sep, 2020 1 commit
    • M. Haseeb's avatar
      ENA-3339 · ff41ade1
      M. Haseeb authored
      - added the ability to determine replacement T base case based on the source U base.
      ff41ade1