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enasequence
webin-portal
Commits
c7c1978d
Commit
c7c1978d
authored
Jun 17, 2021
by
Rajkumar-D
Browse files
Adding welcome message
parent
b0215286
Pipeline
#167151
passed with stages
in 5 minutes
Changes
4
Pipelines
2
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4 changed files
with
31 additions
and
7 deletions
+31
-7
src/app/checklist/checklist.component.ts
src/app/checklist/checklist.component.ts
+4
-4
src/app/login/login.component.css
src/app/login/login.component.css
+7
-0
src/app/login/login.component.html
src/app/login/login.component.html
+13
-2
src/app/read-submission/read-submission.component.html
src/app/read-submission/read-submission.component.html
+7
-1
No files found.
src/app/checklist/checklist.component.ts
View file @
c7c1978d
...
...
@@ -169,7 +169,7 @@ export class ChecklistComponent implements OnInit {
this
.
mandatoryFields
=
{};
// Add sample related fields when checklist type is sample.
if
(
this
.
checklistType
===
ChecklistType
.
sample
)
{
this
.
selectedChecklist
.
fieldGroups
.
push
(
this
.
getSampleSpecificFields
())
this
.
selectedChecklist
.
fieldGroups
.
unshift
(
this
.
getSampleSpecificFields
())
}
this
.
selectedChecklist
.
fieldGroups
.
forEach
((
fieldGroup
)
=>
{
fieldGroup
.
fields
.
forEach
((
field
)
=>
{
...
...
@@ -492,7 +492,7 @@ export class ChecklistComponent implements OnInit {
name
:
"
sample_alias
"
,
label
:
"
Sample alias (unique name)
"
,
description
:
"
Unique name of the sample. If not selected system will auto generate an unique alias
"
,
mandatory
:
"
optional
"
,
mandatory
:
"
mandatory
"
,
textChoice
:
[],
type
:
"
TEXT_FIELD
"
,
units
:
[]
...
...
@@ -501,7 +501,7 @@ export class ChecklistComponent implements OnInit {
name
:
"
sample_title
"
,
label
:
"
Sample title
"
,
description
:
"
Title of the sample
"
,
mandatory
:
"
optional
"
,
mandatory
:
"
mandatory
"
,
textChoice
:
[],
type
:
"
TEXT_FIELD
"
,
units
:
[]
...
...
@@ -510,7 +510,7 @@ export class ChecklistComponent implements OnInit {
name
:
"
sample_description
"
,
label
:
"
Sample description
"
,
description
:
"
Description of the sample
"
,
mandatory
:
"
optional
"
,
mandatory
:
"
mandatory
"
,
textChoice
:
[],
type
:
"
TEXT_FIELD
"
,
units
:
[]
...
...
src/app/login/login.component.css
View file @
c7c1978d
...
...
@@ -6,6 +6,13 @@
width
:
325px
;
}
.welcome-card
{
width
:
40%
;
margin-right
:
15px
;
min-height
:
325px
;
background
:
none
;
}
input
[
type
=
"password"
]
{
box-shadow
:
none
;
height
:
auto
;
...
...
src/app/login/login.component.html
View file @
c7c1978d
<form
(ngSubmit)=
"login()"
autocomplete=
"off"
>
<div
fxLayout=
"row"
fxLayoutAlign=
"center center"
class=
"login-card-container"
>
<div
fxLayout=
"row"
fxLayoutAlign=
"left center"
class=
"login-card-container"
>
<mat-card
class=
"welcome-card mat-elevation-z0"
>
<mat-card-title>
Welcome to the Webin submission service.
</mat-card-title>
<div>
<mat-card-subtitle
style=
"text-align: left;"
>
<p>
You can use this service to submit sequence reads and to register metadata such as studies (projects) and
samples. To submit human data requiring controlled access please log in using EGA credentials.
</p>
<p>
New to Webin? Please register using the Register button.
</p>
</mat-card-subtitle>
</div>
</mat-card>
<mat-card
class=
"login-card"
>
<mat-card-header>
<mat-card-header
class=
"login-card"
>
<mat-card-title>
Login
</mat-card-title>
<mat-card-subtitle>
Please provide your Webin credentials
</mat-card-subtitle>
</mat-card-header>
...
...
src/app/read-submission/read-submission.component.html
View file @
c7c1978d
...
...
@@ -12,7 +12,10 @@
href=
"https://ena-docs.readthedocs.io/en/latest/reads/webin-cli.html"
>
Webin-CLI
</a>
, raw sequences must
be
<a
href=
"https://ena-docs.readthedocs.io/en/latest/fileprep/upload.html"
>
uploaded
</a>
in one of the
supported
<a
href=
"https://ena-docs.readthedocs.io/en/latest/fileprep/reads.html"
>
data formats
</a>
before
they can be submitted. The study and the sequenced samples must be pre-registered before the raw reads are
they can be submitted. The files can be uploaded using Webin
<a
href=
"http://www.ebi.ac.uk/ena/upload/WebinUploader.jnlp"
>
File Uploader
</a>
, FTP or Aspera
</p>
<p
class=
"mat-body"
>
The study and the sequenced samples must be pre-registered before the raw reads are
submitted. Please note that each individual study and sample should be registered only once. You will be
asked to provide information about the sequencing libraries and instruments. Please quote the study
accession number (ERP*) when citing data submitted to ENA.
</p>
...
...
@@ -20,6 +23,9 @@
<p
class=
"mat-body"
>
Read
<a
href=
"https://ena-docs.readthedocs.io/en/latest/reads/interactive.html"
>
here
</a>
for
more information on how submit your raw reads to ENA.
</p>
<p
class=
"mat-body"
>
A dedicated submission API for COVID-19 genomes is available
<a
href=
"https://www.ebi.ac.uk/ena/submit/webin-cli"
>
here
</a></p>
<mat-expansion-panel
(opened)=
"panelOpenState = true"
(closed)=
"panelOpenState = false"
class=
"mat-body"
>
<mat-expansion-panel-header>
<mat-panel-title>
...
...
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