ensembl-hive  2.1
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Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf Class Reference
+ Inheritance diagram for Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf:
+ Collaboration diagram for Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf:

Public Member Functions

public default_options ()
 
public pipeline_analyses ()
 
- Public Member Functions inherited from Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
public default_options ()
 
public pipeline_create_commands ()
 
public pipeline_wide_parameters ()
 
public resource_classes ()
 
public pipeline_analyses ()
 
public beekeeper_extra_cmdline_options ()
 
public hive_meta_table ()
 
public pre_options ()
 
public dbconn_2_mysql ()
 
public dbconn_2_pgsql ()
 
public db_connect_command ()
 
public db_execute_command ()
 
public dbconn_2_url ()
 
public pipeline_url ()
 
public db_cmd ()
 
public pipeline_name ()
 
public process_options ()
 
public overridable_pipeline_create_commands ()
 
public run_pipeline_create_commands ()
 
public add_objects_from_config ()
 
public useful_commands_legend ()
 
- Public Member Functions inherited from Bio::EnsEMBL::Hive::DependentOptions
public new ()
 
public use_cases ()
 
public load_cmdline_options ()
 
public root ()
 
public is_fully_substituted_string ()
 
public is_fully_substituted_structure ()
 
public hash_leaves ()
 
public o ()
 
public substitute ()
 
public merge_from_rules ()
 
public process_options ()
 

Detailed Description

Synopsis

init_pipeline.pl Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf -password <your_password>
init_pipeline.pl Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf -password <your_password> -only_databases '%'

Member Function Documentation

public Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf::default_options ( )

Undocumented method

Code:
click to view
public Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf::pipeline_analyses ( )

Undocumented method

Code:
click to view

The documentation for this class was generated from the following file: