ensembl-hive  2.1
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Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor Class Reference
+ Inheritance diagram for Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor:
+ Collaboration diagram for Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor:

Public Member Functions

public default_table_name ()
 
public default_insertion_method ()
 
public object_class ()
 
public fetch_all_failed_analyses ()
 
public fetch_by_logic_name_or_url ()
 
public fetch_by_url_query ()
 
- Public Member Functions inherited from Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor
public object_class ()
 
public slicer ()
 
public objectify ()
 
public mark_stored ()
 
public keys_to_columns ()
 
- Public Member Functions inherited from Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
public default_table_name ()
 
public default_insertion_method ()
 
public default_overflow_limit ()
 
public default_input_column_mapping ()
 
public new ()
 
public db ()
 
public dbc ()
 
public prepare ()
 
public overflow_limit ()
 
public input_column_mapping ()
 
public table_name ()
 
public insertion_method ()
 
public column_set ()
 
public primary_key ()
 
public updatable_column_list ()
 
public autoinc_id ()
 
protected _table_info_loader ()
 
public count_all ()
 
public fetch_all ()
 
public primary_key_constraint ()
 
public fetch_by_dbID ()
 
public remove_all ()
 
public remove ()
 
public update ()
 
public store_or_update_one ()
 
public check_object_present_in_db_by_content ()
 
public store ()
 
public DESTROY ()
 
public AUTOLOAD ()
 

Detailed Description

Synopsis

$analysis_adaptor = $db_adaptor->get_AnalysisAdaptor;
$analysis_adaptor = $analysis_object->adaptor;

Description

    Module to encapsulate all db access for persistent class Analysis.
    There should be just one such adaptor per application and database connection.

Member Function Documentation

public Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::default_insertion_method ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::default_table_name ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::fetch_all_failed_analyses ( )

Undocumented method

Code:
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public Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::fetch_by_logic_name_or_url ( )
    Description: given a URL gets the analysis from URLFactory, otherwise fetches it from the db
 
Code:
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public Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::fetch_by_url_query ( )
    Description: fetches the analysis either by logic_name or by dbID (either coming from the tail of the URL)
 
Code:
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public Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::object_class ( )

Undocumented method

Code:
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The documentation for this class was generated from the following file: