ensembl-hive  2.1
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Bio::EnsEMBL::Hive::PipeConfig::AnyCommands_conf Class Reference
+ Inheritance diagram for Bio::EnsEMBL::Hive::PipeConfig::AnyCommands_conf:
+ Collaboration diagram for Bio::EnsEMBL::Hive::PipeConfig::AnyCommands_conf:

Public Member Functions

public pipeline_analyses ()
 
- Public Member Functions inherited from Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
public default_options ()
 
public pipeline_create_commands ()
 
public pipeline_wide_parameters ()
 
public resource_classes ()
 
public pipeline_analyses ()
 
public beekeeper_extra_cmdline_options ()
 
public hive_meta_table ()
 
public pre_options ()
 
public dbconn_2_mysql ()
 
public dbconn_2_pgsql ()
 
public db_connect_command ()
 
public db_execute_command ()
 
public dbconn_2_url ()
 
public pipeline_url ()
 
public db_cmd ()
 
public pipeline_name ()
 
public process_options ()
 
public overridable_pipeline_create_commands ()
 
public run_pipeline_create_commands ()
 
public add_objects_from_config ()
 
public useful_commands_legend ()
 
- Public Member Functions inherited from Bio::EnsEMBL::Hive::DependentOptions
public new ()
 
public use_cases ()
 
public load_cmdline_options ()
 
public root ()
 
public is_fully_substituted_string ()
 
public is_fully_substituted_structure ()
 
public hash_leaves ()
 
public o ()
 
public substitute ()
 
public merge_from_rules ()
 
public process_options ()
 

Detailed Description

Synopsis

init_pipeline.pl Bio::EnsEMBL::Hive::PipeConfig::AnyCommands_conf -password <your_password>
seed_pipeline.pl -url $HIVE_URL -logic_name perform_cmd -input_id "{'cmd' => 'gzip pdfs/RondoAllaTurca_Mozart_Am.pdf; sleep 5'}"
runWorker.pl -url $HIVE_URL
seed_pipeline.pl -url $HIVE_URL -logic_name perform_cmd -input_id "{'cmd' => 'gzip -d pdfs/RondoAllaTurca_Mozart_Am.pdf.gz ; sleep 4'}"
runWorker.pl -url $HIVE_URL

Description

    This is the smallest Hive pipeline example possible.
    The pipeline has only one analysis, which can run any shell command defined in each job by setting its 'cmd' parameter.

Member Function Documentation

public Bio::EnsEMBL::Hive::PipeConfig::AnyCommands_conf::pipeline_analyses ( )

Undocumented method

Code:
click to view

The documentation for this class was generated from the following file: