seed_pipeline.html 2.43 KB
Newer Older
Matthieu Muffato's avatar
Matthieu Muffato committed
1 2 3 4 5 6
<?xml version="1.0" ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>seed_pipeline.pl</title>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
7
<link rev="made" href="mailto:root@localhost" />
Matthieu Muffato's avatar
Matthieu Muffato committed
8 9
</head>

10
<body>
Matthieu Muffato's avatar
Matthieu Muffato committed
11 12


13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34

<h1 id="NAME">NAME</h1>

<pre><code>    seed_pipeline.pl</code></pre>

<h1 id="SYNOPSIS">SYNOPSIS</h1>

<pre><code>    seed_pipeline.pl {-url &lt;url&gt; | -reg_conf &lt;reg_conf&gt; [-reg_type &lt;reg_type&gt;] -reg_alias &lt;reg_alias&gt;} [ {-analysis_id &lt;analysis_id&gt; | -logic_name &lt;logic_name&gt;} [ -input_id &lt;input_id&gt; ] ]</code></pre>

<h1 id="DESCRIPTION">DESCRIPTION</h1>

<pre><code>    seed_pipeline.pl is a generic script that is used to create {initial or top-up} jobs for hive pipelines</code></pre>

<h1 id="USAGE-EXAMPLES">USAGE EXAMPLES</h1>

<pre><code>        # find out which analyses may need seeding (with an example input_id):

    seed_pipeline.pl -url &quot;mysql://ensadmin:${ENSADMIN_PSW}@localhost:3306/lg4_long_mult&quot;


        # seed one job into the &quot;start&quot; analysis:

Matthieu Muffato's avatar
Matthieu Muffato committed
35
    seed_pipeline.pl -url &quot;mysql://ensadmin:${ENSADMIN_PSW}@localhost:3306/lg4_long_mult&quot; \
36 37 38 39
                     -logic_name start -input_id &#39;{&quot;a_multiplier&quot; =&gt; 2222222222, &quot;b_multiplier&quot; =&gt; 3434343434}&#39;</code></pre>

<h1 id="LICENSE">LICENSE</h1>

40
<pre><code>    Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
41
    Copyright [2016-2020] EMBL-European Bioinformatics Institute
42

Matthieu Muffato's avatar
Matthieu Muffato committed
43
    Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may not use this file except in compliance with the License.
44 45 46 47
    You may obtain a copy of the License at

         http://www.apache.org/licenses/LICENSE-2.0

Matthieu Muffato's avatar
Matthieu Muffato committed
48 49
    Unless required by applicable law or agreed to in writing, software distributed under the License
    is distributed on an &quot;AS IS&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
50 51 52 53 54 55
    See the License for the specific language governing permissions and limitations under the License.</code></pre>

<h1 id="CONTACT">CONTACT</h1>

<pre><code>    Please subscribe to the Hive mailing list:  http://listserver.ebi.ac.uk/mailman/listinfo/ehive-users  to discuss Hive-related questions or to be notified of our updates</code></pre>

Matthieu Muffato's avatar
Matthieu Muffato committed
56 57 58 59

</body>

</html>
60 61