ObjectAdaptor.pm 1.75 KB
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=pod

=head1 NAME

  Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor

=head1 SYNOPSIS

    $object_adaptor = $dba->get_SpecificObjectAdaptor;
    $object_adaptor = $specific_object->adaptor;

=head1 DESCRIPTION

    This module defines a parent class for all specific object adaptors.
    It is not supposed to be instantiated directly.

=head1 CONTACT

  Please contact ehive-users@ebi.ac.uk mailing list with questions/suggestions.

=cut


package Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor;

use strict;

use base ('Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor');


sub object_class {
    die "Please define object_class() in your specific adaptor class to return the class name of your intended object";
}


sub slicer {    # take a slice of the object (if only we could inline in Perl!)
    my ($self, $object, $fields) = @_;

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    my $autoinc_id = $self->autoinc_id();

    return [ map { ($_ eq $autoinc_id) ? $object->dbID() : $object->$_() } @$fields ];
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}


sub objectify { # turn the hashref into an object (if only we could inline in Perl!)
    my ($self, $hashref) = @_;

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    my $autoinc_id = $self->autoinc_id();

    return $self->object_class()->new( -adaptor => $self, map { ('-'.uc( ($_ eq $autoinc_id) ? 'dbID' : $_ ) => $hashref->{$_}) } keys %$hashref );
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}


sub mark_stored {
    my ($self, $object, $dbID) = @_;

    if($self->autoinc_id()) {
        $object->dbID($dbID);
    }
    $object->adaptor($self);
}


sub create_new {
    my $self = shift @_;

    my $check_presence_in_db_first = (scalar(@_)%2)
        ? pop @_    # extra 'odd' parameter that would disrupt the hash integrity anyway
        : 0;        # do not check by default

    my $object = $self->object_class()->new( -adaptor => $self, @_ );

    return $self->store( $object, $check_presence_in_db_first );
}


1;