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<?xml version="1.0" ?>
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<title>generate_graph.pl</title>
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<link rev="made" href="mailto:vxd@glow.apple.com" />
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<h1 id="NAME">NAME</h1>

<pre><code>    generate_graph.pl</code></pre>

<h1 id="SYNOPSIS">SYNOPSIS</h1>

<pre><code>    ./generate_graph.pl [ -url mysql://user:pass@server:port/dbname ] [-pipeconfig TopUp_conf.pm]* -output OUTPUT_LOC [-help]</code></pre>

<h1 id="DESCRIPTION">DESCRIPTION</h1>

<pre><code>    This program will generate a graphical representation of your hive pipeline.
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    This includes visalising the flow of data from the different analyses, blocking
    rules &amp; table writers. The graph is also coloured to indicate the stage
    an analysis is at. The colours &amp; fonts used can be configured via
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    hive_config.json configuration file.</code></pre>

<h1 id="OPTIONS">OPTIONS</h1>

<p><b>--url</b></p>

<pre><code>    url defining where hive database is located</code></pre>

<p><b>--reg_conf</b></p>

<pre><code>    path to a Registry configuration file</code></pre>

<p><b>--reg_alias</b></p>

<pre><code>    species/alias name for the Hive DBAdaptor</code></pre>

<p><b>--pipeconfig</b></p>

<pre><code>    A pipeline configuration file that can function both as the initial source of pipeline structure or as a top-up config.
    This option can now be used multiple times for multiple top-ups.</code></pre>

<p><b>--output</b></p>

<pre><code>    Location of the file to write to.
    The file extension (.png , .jpeg , .dot , .gif , .ps) will define the output format.</code></pre>

<h1 id="EXTERNAL-DEPENDENCIES">EXTERNAL DEPENDENCIES</h1>

<pre><code>    GraphViz</code></pre>

<h1 id="LICENSE">LICENSE</h1>

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<pre><code>    Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
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<pre><code>    Copyright [2016-2018] EMBL-European Bioinformatics Institute
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    Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may not use this file except in compliance with the License.
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    You may obtain a copy of the License at

         http://www.apache.org/licenses/LICENSE-2.0

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    Unless required by applicable law or agreed to in writing, software distributed under the License
    is distributed on an &quot;AS IS&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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    See the License for the specific language governing permissions and limitations under the License.</code></pre>

<h1 id="CONTACT">CONTACT</h1>

<pre><code>    Please subscribe to the Hive mailing list:  http://listserver.ebi.ac.uk/mailman/listinfo/ehive-users  to discuss Hive-related questions or to be notified of our updates</code></pre>

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