From 04ad0fabbf6878c62d89670a7ae32d289cd7edd3 Mon Sep 17 00:00:00 2001
From: Leo Gordon <lg4@ebi.ac.uk>
Date: Tue, 1 May 2012 09:58:40 +0000
Subject: [PATCH] no longer used
---
modules/Bio/EnsEMBL/Hive/Extensions.pm | 30 --------------------------
modules/Bio/EnsEMBL/Hive/Process.pm | 1 -
2 files changed, 31 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Hive/Extensions.pm b/modules/Bio/EnsEMBL/Hive/Extensions.pm
index d0f4baefe..62789cb6d 100755
--- a/modules/Bio/EnsEMBL/Hive/Extensions.pm
+++ b/modules/Bio/EnsEMBL/Hive/Extensions.pm
@@ -33,8 +33,6 @@ use Bio::EnsEMBL::Utils::Exception;
use Bio::EnsEMBL::Analysis;
use Bio::EnsEMBL::DBSQL::DBConnection;
use Bio::EnsEMBL::Hive::URLFactory;
-#use Bio::EnsEMBL::Pipeline::RunnableDB;
-#use Bio::EnsEMBL::Analysis::RunnableDB;
=head2 Bio::EnsEMBL::Analysis::process
@@ -161,34 +159,6 @@ sub Bio::EnsEMBL::Analysis::stats
return $stats;
}
-=head2 Bio::EnsEMBL::Analysis::data
-
- Arg [1] : none
- Example : $stats = $analysis->data;
- Description: returns the analysis data associated with this Analysis
- object. The data is stored in the analysis_data table.
- Does not cache, but pull from database by using the
- Analysis objects adaptor->db.
- Returntype : String
- Exceptions : none
- Caller : general
-
-=cut
-
-sub Bio::EnsEMBL::Analysis::data
-{
- my $self = shift;
- my $data = "";
-
- my $analysis_data_id = eval($self->parameters)->{'analysis_data_id'};
- unless ( $analysis_data_id) {
- warning( " analysis_data_id undefined for analysis " .$self->logic_name. " in analysis_data table.") ;
- }else {
- $data = $self->adaptor->db->get_AnalysisDataAdaptor->fetch_by_dbID($analysis_data_id) ;
- }
- return $data;
-}
-
#######################################
# extensions to
diff --git a/modules/Bio/EnsEMBL/Hive/Process.pm b/modules/Bio/EnsEMBL/Hive/Process.pm
index 5ee97f0ca..5c279717f 100755
--- a/modules/Bio/EnsEMBL/Hive/Process.pm
+++ b/modules/Bio/EnsEMBL/Hive/Process.pm
@@ -90,7 +90,6 @@ use Bio::EnsEMBL::DBSQL::DBConnection;
use Bio::EnsEMBL::Utils::Argument;
use Bio::EnsEMBL::Utils::Exception ('throw');
use Bio::EnsEMBL::Hive::Utils ('url2dbconn_hash');
-#use Bio::EnsEMBL::Hive::AnalysisJob;
use base ('Bio::EnsEMBL::Utils::Exception'); # provide these methods for deriving classes
--
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