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ensembl-gh-mirror
ensembl-hive
Commits
0cab5341
Commit
0cab5341
authored
May 11, 2012
by
Leo Gordon
Browse files
moved the "meadow-collection" code into a separate class called "Valley"
parent
a8d596d6
Changes
1
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8 additions
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29 deletions
+8
-29
scripts/beekeeper.pl
scripts/beekeeper.pl
+8
-29
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scripts/beekeeper.pl
View file @
0cab5341
...
...
@@ -4,25 +4,17 @@ use strict;
use
warnings
;
use
Getopt::
Long
;
use
Bio::EnsEMBL::Hive::
Utils
('
script_usage
',
'
destringify
'
,
'
find_submodules
'
);
use
Bio::EnsEMBL::Hive::
Utils
('
script_usage
',
'
destringify
');
use
Bio::EnsEMBL::Hive::DBSQL::
DBAdaptor
;
use
Bio::EnsEMBL::Hive::
Worker
;
use
Bio::EnsEMBL::Hive::
Queen
;
use
Bio::EnsEMBL::Hive::
URLFactory
;
use
Bio::EnsEMBL::Hive::DBSQL::
AnalysisCtrlRuleAdaptor
;
use
Bio::EnsEMBL::Hive::
Valley
;
main
();
sub
main
{
my
%available_meadow_classes
=
();
foreach
my
$meadow_class
(
@
{
find_submodules
('
Bio::EnsEMBL::Hive::Meadow
')
})
{
eval
"
require
$meadow_class
";
if
(
$meadow_class
->
available
)
{
$available_meadow_classes
{
$meadow_class
}
=
1
;
}
}
$|
=
1
;
Bio::EnsEMBL::
Registry
->
no_version_check
(
1
);
...
...
@@ -48,7 +40,7 @@ sub main {
my
$no_pend_adjust
=
0
;
my
$submit_workers_max
=
50
;
my
$total_workers_max
=
undef
;
my
$meadow_name
=
''
;
my
$meadow_name
=
undef
;
my
$meadow_options
=
'';
my
$run
=
0
;
my
$max_loops
=
0
;
# not running by default
...
...
@@ -178,25 +170,12 @@ sub main {
print
STDERR
"
+---------------------------------------------------------------------+
\n
";
}
$meadow_name
=
'
LOCAL
'
if
(
$local
);
my
$valley
=
Bio::EnsEMBL::Hive::
Valley
->
new
(
-
current_meadow_class
=>
$meadow_name
);
unless
(
$meadow_name
or
$local
)
{
# first try anything but local
foreach
my
$mn
(
keys
%available_meadow_classes
)
{
if
(
$mn
!~
/LOCAL$/i
)
{
$meadow_name
=
$mn
;
last
;
}
}
}
$meadow_name
||=
'
LOCAL
';
# but default to local in the end
$meadow_name
=
'
Bio::EnsEMBL::Hive::Meadow::
'
.
uc
(
$meadow_name
)
unless
(
$meadow_name
=~
/::/
);
unless
(
$available_meadow_classes
{
$meadow_name
})
{
die
"
Meadow '
$meadow_name
' does not seem to be available on this machine, please investigate
";
}
warn
"
Current meadow: '
$meadow_name
'
\n
";
my
$meadow_object
=
$meadow_name
->
new
();
my
$current_meadow_class
=
$valley
->
current_meadow_class
();
warn
"
Current meadow: '
$current_meadow_class
'
\n
";
my
$meadow_object
=
$current_meadow_class
->
new
();
$meadow_object
->
meadow_options
(
$meadow_options
);
$meadow_object
->
total_running_workers_max
(
$total_workers_max
)
if
(
$total_workers_max
);
$meadow_object
->
pending_adjust
(
not
$no_pend_adjust
);
...
...
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