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ensembl-gh-mirror
ensembl-hive
Commits
0d1b4a80
Commit
0d1b4a80
authored
Sep 03, 2010
by
Leo Gordon
Browse files
unification of inheritance syntax
parent
20177135
Changes
6
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6 changed files
with
8 additions
and
13 deletions
+8
-13
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
+1
-2
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm
+2
-2
modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
+1
-4
modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm
modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm
+1
-1
modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm
modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm
+1
-1
modules/Bio/EnsEMBL/Hive/Queen.pm
modules/Bio/EnsEMBL/Hive/Queen.pm
+2
-3
No files found.
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm
View file @
0d1b4a80
...
...
@@ -40,12 +40,11 @@ package Bio::EnsEMBL::Hive::DBSQL::AnalysisCtrlRuleAdaptor;
use
strict
;
use
Carp
;
use
Bio::EnsEMBL::DBSQL::
BaseAdaptor
;
use
Bio::EnsEMBL::Hive::
AnalysisCtrlRule
;
use
Bio::EnsEMBL::Utils::
Argument
;
use
Bio::EnsEMBL::Utils::
Exception
;
our
@ISA
=
qw(
Bio::EnsEMBL::DBSQL::BaseAdaptor)
;
use
base
('
Bio::EnsEMBL::DBSQL::BaseAdaptor
'
);
=head2 fetch_by_ctrled_analysis_id
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm
View file @
0d1b4a80
...
...
@@ -40,11 +40,11 @@
package
Bio::EnsEMBL::Hive::DBSQL::
AnalysisDataAdaptor
;
use
strict
;
use
Bio::EnsEMBL::DBSQL::
BaseAdaptor
;
use
Bio::EnsEMBL::Utils::
Argument
qw(rearrange)
;
use
Bio::EnsEMBL::Utils::
Exception
qw(throw warning)
;
our
@ISA
=
qw(Bio::EnsEMBL::DBSQL::BaseAdaptor)
;
use
base
('
Bio::EnsEMBL::DBSQL::BaseAdaptor
');
sub
fetch_by_dbID
{
my
(
$self
,
$data_id
)
=
@_
;
...
...
modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm
View file @
0d1b4a80
...
...
@@ -35,13 +35,10 @@ Bio::EnsEMBL::Hive::DBSQL::DBAdaptor
package
Bio::EnsEMBL::Hive::DBSQL::
DBAdaptor
;
use
vars
qw(@ISA)
;
use
strict
;
use
Bio::EnsEMBL::DBSQL::
DBConnection
;
use
Bio::EnsEMBL::DBSQL::
DBAdaptor
;
@ISA
=
qw(
Bio::EnsEMBL::DBSQL::DBAdaptor
)
;
use
base
('
Bio::EnsEMBL::DBSQL::DBAdaptor
'
);
sub
get_Queen
{
...
...
modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm
View file @
0d1b4a80
...
...
@@ -5,7 +5,7 @@ package Bio::EnsEMBL::Hive::Meadow::LOCAL;
use
strict
;
use
Sys::
Hostname
;
use
base
'
Bio::EnsEMBL::Hive::Meadow
';
use
base
(
'
Bio::EnsEMBL::Hive::Meadow
'
)
;
sub
get_current_worker_process_id
{
my
(
$self
)
=
@_
;
...
...
modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm
View file @
0d1b4a80
...
...
@@ -4,7 +4,7 @@ package Bio::EnsEMBL::Hive::Meadow::LSF;
use
strict
;
use
base
'
Bio::EnsEMBL::Hive::Meadow
';
use
base
(
'
Bio::EnsEMBL::Hive::Meadow
'
)
;
sub
get_current_worker_process_id
{
my
(
$self
)
=
@_
;
...
...
modules/Bio/EnsEMBL/Hive/Queen.pm
View file @
0d1b4a80
...
...
@@ -61,16 +61,15 @@ package Bio::EnsEMBL::Hive::Queen;
use
strict
;
use
POSIX
;
use
Sys::
Hostname
;
use
Bio::EnsEMBL::Utils::
Argument
;
use
Bio::EnsEMBL::Utils::
Exception
;
use
Bio::EnsEMBL::Hive::
Worker
;
use
Bio::EnsEMBL::DBSQL::
BaseAdaptor
;
use
Sys::
Hostname
;
use
Bio::EnsEMBL::Hive::DBSQL::
AnalysisCtrlRuleAdaptor
;
use
base
('
Bio::EnsEMBL::DBSQL::BaseAdaptor
');
our
@ISA
=
qw(Bio::EnsEMBL::DBSQL::BaseAdaptor)
;
############################
#
...
...
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