SemaphoreBoxes colours moved under "Colours" section

hive_config.json

@@ -18,6 +18,10 @@
                 "control"    : "red",
                 "semablock"  : "red",
             },
+            "SemaphoreBoxes" : {
+                "ColourScheme"  : "blues9",  # Examples: "blues9" or "bugn7" or "orrd8" or "purples7" or "ylorbr9"
+                "ColourOffset"  : 1,
+            },
         },
         "Fonts" : {
             "node" : "Helvetica",
@@ -25,11 +29,7 @@
         },
         "DisplayDetails"        : 1,
         "DisplayStretched"      : 0,
-        "SemaphoreBoxes" : {
-            "Display"       : 1,
-            "ColourScheme"  : "blues9",  # Examples: "blues9" or "bugn7" or "orrd8" or "purples7" or "ylorbr9"
-            "ColourOffset"  : 1,
-        },
+        "DisplaySemaphoreBoxes" : 1,
     }
 }
 

modules/Bio/EnsEMBL/Hive/Utils/Graph.pm

@@ -28,7 +28,7 @@ $Author: lg4 $
 
 =head1 VERSION
 
-$Revision: 1.14 $
+$Revision: 1.15 $
 
 =cut
 
@@ -194,10 +194,10 @@ sub build {
         }
     }
 
-    if($self->config->get('Graph', 'SemaphoreBoxes', 'Display') ) {
+    if($self->config->get('Graph', 'DisplaySemaphoreBoxes') ) {
         $self->graph->subgraphs( \%subgraph_allocation );
-        $self->graph->colour_scheme( $self->config->get('Graph', 'SemaphoreBoxes', 'ColourScheme') );
-        $self->graph->colour_offset( $self->config->get('Graph', 'SemaphoreBoxes', 'ColourOffset') );
+        $self->graph->colour_scheme( $self->config->get('Graph', 'Colours', 'SemaphoreBoxes', 'ColourScheme') );
+        $self->graph->colour_offset( $self->config->get('Graph', 'Colours', 'SemaphoreBoxes', 'ColourOffset') );
     }
 
     return $self->graph();