Commit 2bb05ec2 authored by Leo Gordon's avatar Leo Gordon
Browse files

bugfix in docs

parent b891ee83
......@@ -281,36 +281,36 @@ runWorker.pl [options]
=head2 Connection parameters
-conf <path> : config file describing db connection\n";
-regfile <path> : path to a Registry configuration file\n";
-regname <string> : species/alias name for the Hive DBAdaptor\n";
-url <url string> : url defining where database is located\n";
-host <machine> : mysql database host <machine>\n";
-port <port#> : mysql port number\n";
-user <name> : mysql connection user <name>\n";
-password <pass> : mysql connection password\n";
-database <name> : mysql database <name>\n";
-conf <path> : config file describing db connection
-regfile <path> : path to a Registry configuration file
-regname <string> : species/alias name for the Hive DBAdaptor
-url <url string> : url defining where database is located
-host <machine> : mysql database host <machine>
-port <port#> : mysql port number
-user <name> : mysql connection user <name>
-password <pass> : mysql connection password
-database <name> : mysql database <name>
=head2 Job/Analysis control parameters:
-analysis_id <id> : analysis_id in db\n";
-logic_name <string> : logic_name of analysis to make this worker\n";
-batch_size <num> : #jobs to claim at a time\n";
-limit <num> : #jobs to run before worker can die naturally\n";
-lifespan <num> : number of minutes this worker is allowed to run\n";
-outdir <path> : directory where stdout/stderr is redirected\n";
-bk <string> : beekeeper identifier\n";
-pid <string> : externally set process_id descriptor (e.g. lsf job_id, array_id)\n";
-input_id <string> : test input_id on specified analysis (analysis_id or logic_name)\n";
-job_id <id> : run specific job defined by analysis_job_id\n";
-analysis_stats : show status of each analysis in hive\n";
-no_cleanup : don't perform global_cleanup when worker exits\n";
-no_write : don't write_output or auto_dataflow input_job\n";
-analysis_id <id> : analysis_id in db
-logic_name <string> : logic_name of analysis to make this worker
-batch_size <num> : #jobs to claim at a time
-limit <num> : #jobs to run before worker can die naturally
-lifespan <num> : number of minutes this worker is allowed to run
-outdir <path> : directory where stdout/stderr is redirected
-bk <string> : beekeeper identifier
-pid <string> : externally set process_id descriptor (e.g. lsf job_id, array_id)
-input_id <string> : test input_id on specified analysis (analysis_id or logic_name)
-job_id <id> : run specific job defined by analysis_job_id
-analysis_stats : show status of each analysis in hive
-no_cleanup : don't perform global_cleanup when worker exits
-no_write : don't write_output or auto_dataflow input_job
=head2 Other options:
-help : print this help\n";
-debug <level> : turn on debug messages at <level> \n";
-help : print this help
-debug <level> : turn on debug messages at <level>
=cut
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