From 31699e3afdfbfda6374a1372d14400f1c9d06dea Mon Sep 17 00:00:00 2001
From: Leo Gordon <lg4@ebi.ac.uk>
Date: Thu, 3 Jul 2014 15:34:14 +0100
Subject: [PATCH] bugfix : make sure pipeline_wide_parameters are stringified
prior to storing -- thanks, Magali!
---
modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm b/modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm
index a25566317..167840d44 100644
--- a/modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm
+++ b/modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm
@@ -61,6 +61,7 @@ use strict;
use warnings;
use Bio::EnsEMBL::Hive;
+use Bio::EnsEMBL::Hive::Utils ('stringify');
use Bio::EnsEMBL::Hive::Utils::Collection;
use Bio::EnsEMBL::Hive::Utils::URL;
use Bio::EnsEMBL::Hive::DBSQL::DBAdaptor;
@@ -469,7 +470,7 @@ sub add_objects_from_config {
while( my ($param_name, $param_value) = each %$new_pwp_entries ) {
Bio::EnsEMBL::Hive::PipelineWideParameters->add_new_or_update(
'param_name' => $param_name,
- 'param_value' => $param_value,
+ 'param_value' => stringify($param_value),
);
}
warn "Done.\n\n";
--
GitLab