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ensembl-gh-mirror
ensembl-hive
Commits
3fef1528
Commit
3fef1528
authored
Oct 01, 2015
by
Leo Gordon
Browse files
cleanup: -no_analysis_stats was no longer supported
parent
71cefed0
Changes
2
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2 changed files
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2 additions
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5 deletions
+2
-5
docs/scripts/beekeeper.html
docs/scripts/beekeeper.html
+0
-1
scripts/beekeeper.pl
scripts/beekeeper.pl
+2
-4
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docs/scripts/beekeeper.html
View file @
3fef1528
...
...
@@ -95,7 +95,6 @@
-unkwn : detect all workers in UNKWN state and reset their jobs for resubmission (careful, they *may* reincarnate!)
-alldead : tell the database all workers are dead (no checks are performed in this mode, so be very careful!)
-balance_semaphores : set all semaphore_counts to the numbers of unDONE fan jobs (emergency use only)
-no_analysis_stats : don
'
t show status of each analysis
-worker_stats : show status of each running worker
-failed_jobs : show all failed jobs
-reset_job_id
<
num
>
: reset a job back to READY so it can be rerun
...
...
scripts/beekeeper.pl
View file @
3fef1528
...
...
@@ -123,7 +123,6 @@ sub main {
'
killworker=i
'
=>
\
$kill_worker_id
,
'
alldead!
'
=>
\
$all_dead
,
'
balance_semaphores
'
=>
\
$balance_semaphores
,
'
no_analysis_stats
'
=>
\
$self
->
{'
no_analysis_stats
'},
'
worker_stats
'
=>
\
$show_worker_stats
,
'
failed_jobs
'
=>
\
$show_failed_jobs
,
'
reset_job_id=i
'
=>
\
$reset_job_id
,
...
...
@@ -302,7 +301,7 @@ sub main {
if
(
$sync
)
{
$queen
->
synchronize_hive
(
$list_of_analyses
);
}
print
$queen
->
print_status_and_return_reasons_to_exit
(
$list_of_analyses
,
!
$self
->
{'
no_analysis_stats
'}
);
print
$queen
->
print_status_and_return_reasons_to_exit
(
$list_of_analyses
);
if
(
$show_worker_stats
)
{
print
"
\n
===== List of live Workers according to the Queen: ======
\n
";
...
...
@@ -384,7 +383,7 @@ sub run_autonomously {
$queen
->
check_for_dead_workers
(
$valley
,
0
);
if
(
$reasons_to_exit
=
$queen
->
print_status_and_return_reasons_to_exit
(
$list_of_analyses
,
!
$self
->
{'
no_analysis_stats
'}
))
{
if
(
$reasons_to_exit
=
$queen
->
print_status_and_return_reasons_to_exit
(
$list_of_analyses
)
)
{
if
(
$keep_alive
)
{
print
"
Beekeeper : detected exit condition, but staying alive because of -keep_alive :
"
.
$reasons_to_exit
;
}
else
{
...
...
@@ -545,7 +544,6 @@ __DATA__
-unkwn : detect all workers in UNKWN state and reset their jobs for resubmission (careful, they *may* reincarnate!)
-alldead : tell the database all workers are dead (no checks are performed in this mode, so be very careful!)
-balance_semaphores : set all semaphore_counts to the numbers of unDONE fan jobs (emergency use only)
-no_analysis_stats : don't show status of each analysis
-worker_stats : show status of each running worker
-failed_jobs : show all failed jobs
-reset_job_id <num> : reset a job back to READY so it can be rerun
...
...
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