Commit 481ab801 authored by Matthieu Muffato's avatar Matthieu Muffato
Browse files

Updated the Doxygen doc for 2.0

parent c9050154
......@@ -19,6 +19,8 @@ var searchData=
['config_5fget',['config_get',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_configurable.html#aeed405377caddb6a1aa3cb605ed6304f',1,'Bio::EnsEMBL::Hive::Configurable']]],
['config_5fhash',['config_hash',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_config.html#ab0ede51b2658eddc43a8f6e9fbf34509',1,'Bio::EnsEMBL::Hive::Utils::Config']]],
['config_5fset',['config_set',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_configurable.html#a3e556c76396430193c3f613c6f3e4079',1,'Bio::EnsEMBL::Hive::Configurable']]],
['connect',['connect',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a06a88cf2f46772a4b1a5d780ffcb4242',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['connected',['connected',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#ad5898fcb340f9986c023175115ef20a0',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['context',['context',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_configurable.html#a419025891535ecd7b2f05183cf2ce8e4',1,'Bio::EnsEMBL::Hive::Configurable']]],
['continue',['continue',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_stopwatch.html#ad91a33ccd3234b64b19bc3083e9367f0',1,'Bio::EnsEMBL::Hive::Utils::Stopwatch']]],
['count_5fall',['count_all',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#a5675f57702aa4cae6bfc1e39eb420bde',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor']]],
......@@ -27,7 +29,6 @@ var searchData=
['create_5fcached_5fdba',['create_cached_dba',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_u_r_l_factory.html#a1cdc4eafa4fb5abf83942dfe21e3a7ff',1,'Bio::EnsEMBL::Hive::URLFactory']]],
['create_5fnew',['create_new',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_object_adaptor.html#a90b0359523ef5040fd0e839edd83cca4',1,'Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor']]],
['create_5fnew_5fworker',['create_new_worker',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_queen.html#a9cd9baa52f9e7a2240ffb979518cfee1',1,'Bio::EnsEMBL::Hive::Queen']]],
['createnewjob',['CreateNewJob',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_job_adaptor.html#a77f78d2fe7e5ac25737ff9322d40e4f9',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor']]],
['csvq',['csvq',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_params.html#a77d324a4242b0c01f6f1288846db43d6',1,'Bio::EnsEMBL::Hive::Params']]],
['ctrled_5fanalysis',['ctrled_analysis',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_ctrl_rule.html#aa7553c12b9b1af1c15d147dd5f5d4fac',1,'Bio::EnsEMBL::Hive::AnalysisCtrlRule']]],
['ctrled_5fanalysis_5fid',['ctrled_analysis_id',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_ctrl_rule.html#ac4c95d1a0114e3d438f8b3b71d40cd70',1,'Bio::EnsEMBL::Hive::AnalysisCtrlRule']]]
......
var searchData=
[
['dangerous_5fmath',['dangerous_math',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_runnable_d_b_1_1_failure_test.html#add6d6e854b8d35f11810311490b17ab9',1,'Bio::EnsEMBL::Hive::RunnableDB::FailureTest']]],
['data_5fdbc',['data_dbc',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#afe4af3210589a3123a939ceaf83c0462',1,'Bio::EnsEMBL::Hive::Process']]],
['data_5fdbc',['data_dbc',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a2d0ad25d584c63aee8a7b45d30afb0e6',1,'Bio::EnsEMBL::Hive::Process']]],
['dataflow',['dataflow',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_accumulator.html#a16b156d26595a7d16e0e04b60d5f6f36',1,'Bio::EnsEMBL::Hive::Accumulator::dataflow()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_naked_table.html#a34c62ade6f73ec76a1b2e46eefdc3f41',1,'Bio::EnsEMBL::Hive::NakedTable::dataflow()']]],
['dataflow_5foutput_5fid',['dataflow_output_id',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_job.html#a02aa287f1ac4ae8ff473bb550dcf5355',1,'Bio::EnsEMBL::Hive::AnalysisJob::dataflow_output_id()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a3fd5b992716a3aa9a5810da1f007aa5b',1,'Bio::EnsEMBL::Hive::Process::dataflow_output_id()']]],
['dataflow_5frules',['dataflow_rules',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_job.html#ae830f1e7b046d1787e65ece0cebc30cd',1,'Bio::EnsEMBL::Hive::AnalysisJob']]],
['db',['db',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a8ca200c10405c13d535353f2646b49a1',1,'Bio::EnsEMBL::Hive::Process']]],
['db',['db',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#a020d1ee154f436e472e855e746b5467d',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::db()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a8ca200c10405c13d535353f2646b49a1',1,'Bio::EnsEMBL::Hive::Process::db()']]],
['db_5fcmd',['db_cmd',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a766a75f28b07ea491d7e8fdc97ee2ad6',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf']]],
['db_5fconnect_5fcommand',['db_connect_command',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#afa08fa64e8dc50604507f72fece0b9e2',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf']]],
['db_5fexecute_5fcommand',['db_execute_command',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a96f20328299d6747be0b641087c012ee',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf']]],
['db_5fhandle',['db_handle',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a8ca48fddb8caeef6f023b0f355359623',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['dba',['dba',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_graph.html#aae6bcf902b62b4a4b698c2ad04165cbe',1,'Bio::EnsEMBL::Hive::Utils::Graph']]],
['dbc',['dbc',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#a704db480f27205d0cf17952fd54ffddf',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::dbc()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#afb5ddec979f7e2ed1f2dc375e26c4456',1,'Bio::EnsEMBL::Hive::Process::dbc()']]],
['dbc',['dbc',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#ab42653d3d95c97a097fba3f8bdf8f686',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::dbc()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#a704db480f27205d0cf17952fd54ffddf',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::dbc()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_statement_handle.html#a147e515a340b4ed46ab743ee5071f049',1,'Bio::EnsEMBL::Hive::DBSQL::StatementHandle::dbc()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#afb5ddec979f7e2ed1f2dc375e26c4456',1,'Bio::EnsEMBL::Hive::Process::dbc()']]],
['dbc_5fhash_5fto_5fcmd',['dbc_hash_to_cmd',['../db__cmd_8pl.html#aa9d6dbdd85d225abef029815f3ca0336',1,'db_cmd.pl']]],
['dbconn_5f2_5fmysql',['dbconn_2_mysql',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a08af9a5dfe9c8a40757a6b3140d4a569',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf']]],
['dbconn_5f2_5fpgsql',['dbconn_2_pgsql',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a116f65a759b66589980b5c84b0cfe1c4',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf']]],
['dbconn_5f2_5furl',['dbconn_2_url',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#af4d7bd7b523fc76a3c58aa15141c5f2c',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf']]],
['dbid',['dbID',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable.html#a5e5743dee1414d2c0dec45b5a5d42216',1,'Bio::EnsEMBL::Hive::Storable']]],
['dbname',['dbname',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#afd4957f557ed09dbe208712c213e9adf',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['debug',['debug',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a4c9739f352e4eea538b17bb88de70285',1,'Bio::EnsEMBL::Hive::Process::debug()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#a274245e911fc8e5f0ef621993c96732a',1,'Bio::EnsEMBL::Hive::Worker::debug()']]],
['decrease_5frequired_5fworkers',['decrease_required_workers',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_stats_adaptor.html#a98976d888957cc7231fcc50e44f21408',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor']]],
['decrease_5frunning_5fworkers',['decrease_running_workers',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_stats_adaptor.html#a15fd023779f6e61df20d84d70dc3e28f',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor']]],
......@@ -22,15 +25,20 @@ var searchData=
['default_5fconfig_5ffiles',['default_config_files',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_config.html#a2bd177535ba7ff4f0d8990a6c50a1241',1,'Bio::EnsEMBL::Hive::Utils::Config']]],
['default_5finput_5fcolumn_5fmapping',['default_input_column_mapping',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_stats_adaptor.html#a66f32625d1fbafc4fafbbc23ac11b442',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor::default_input_column_mapping()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#a2f77cbefb20d4b4e3a40cf75ce420036',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::default_input_column_mapping()']]],
['default_5finsertion_5fmethod',['default_insertion_method',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_adaptor.html#a462f42ba52299b0402dea71c1f265dba',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::default_insertion_method()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_ctrl_rule_adaptor.html#a7a0b17cb2cc51e54df8397325bcc9b88',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisCtrlRuleAdaptor::default_insertion_method()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#a129b813103eead72607723d43d3a6567',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::default_insertion_method()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_dataflow_rule_adaptor.html#ac91050686189e4d62b84fc5ac21c9399',1,'Bio::EnsEMBL::Hive::DBSQL::DataflowRuleAdaptor::default_insertion_method()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_resource_class_adaptor.html#a66aa80f75c5e69493344e9b8f94142bc',1,'Bio::EnsEMBL::Hive::DBSQL::ResourceClassAdaptor::default_insertion_method()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_resource_description_adaptor.html#ac3f259e9b0d6c54b67a3bd027e8e46f9',1,'Bio::EnsEMBL::Hive::DBSQL::ResourceDescriptionAdaptor::default_insertion_method()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_queen.html#ab0c7e6cbb62054c0076d73a52efe9141',1,'Bio::EnsEMBL::Hive::Queen::default_insertion_method()']]],
['default_5foptions',['default_options',['../class_mini_pecan_multi__conf.html#a80b54e2491d5ea2289c81e3fc5e7745a',1,'MiniPecanMulti_conf::default_options()'],['../class_mini_pecan_single2__conf.html#ab1bb3850c9086897fc4f0cadf59b4cac',1,'MiniPecanSingle2_conf::default_options()'],['../class_mini_pecan_single3__conf.html#acfb2470be4a35c3a5d63df3fa4e96ad2',1,'MiniPecanSingle3_conf::default_options()'],['../class_mini_pecan_single__conf.html#a3c145006e519882ca8d9c95d965af7ff',1,'MiniPecanSingle_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_apply_to_databases__conf.html#a9e6433a752ae91242daaed87123f7ad3',1,'Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_failure_test__conf.html#a1763292c10a5df1d25ec8ffbbaeefd75',1,'Bio::EnsEMBL::Hive::PipeConfig::FailureTest_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_fasta_splitter__conf.html#a77596009fcf0b4b84e07090667b28e2f',1,'Bio::EnsEMBL::Hive::PipeConfig::FastaSplitter_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a28568127780ecee07cde885f1ec1a1f3',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_run_list_of_commands_on_farm__conf.html#a2a5f21f07b20e9a7a2e188771f7e5400',1,'Bio::EnsEMBL::Hive::PipeConfig::RunListOfCommandsOnFarm_conf::default_options()']]],
['default_5foptions',['default_options',['../class_mini_pecan_multi__conf.html#a80b54e2491d5ea2289c81e3fc5e7745a',1,'MiniPecanMulti_conf::default_options()'],['../class_mini_pecan_single2__conf.html#ab1bb3850c9086897fc4f0cadf59b4cac',1,'MiniPecanSingle2_conf::default_options()'],['../class_mini_pecan_single3__conf.html#acfb2470be4a35c3a5d63df3fa4e96ad2',1,'MiniPecanSingle3_conf::default_options()'],['../class_mini_pecan_single__conf.html#a3c145006e519882ca8d9c95d965af7ff',1,'MiniPecanSingle_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_apply_to_databases__conf.html#a9e6433a752ae91242daaed87123f7ad3',1,'Bio::EnsEMBL::Hive::PipeConfig::ApplyToDatabases_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_ensembl_generic__conf.html#a2c52ac50d6ca11cd2a522ad485f13bba',1,'Bio::EnsEMBL::Hive::PipeConfig::EnsemblGeneric_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_failure_test__conf.html#a1763292c10a5df1d25ec8ffbbaeefd75',1,'Bio::EnsEMBL::Hive::PipeConfig::FailureTest_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_fasta_splitter__conf.html#a77596009fcf0b4b84e07090667b28e2f',1,'Bio::EnsEMBL::Hive::PipeConfig::FastaSplitter_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a28568127780ecee07cde885f1ec1a1f3',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf::default_options()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_run_list_of_commands_on_farm__conf.html#a2a5f21f07b20e9a7a2e188771f7e5400',1,'Bio::EnsEMBL::Hive::PipeConfig::RunListOfCommandsOnFarm_conf::default_options()']]],
['default_5foverflow_5flimit',['default_overflow_limit',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_job_adaptor.html#ad5638f98e14c623db7787ae6da2f38cf',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor::default_overflow_limit()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#ac73267d0e33aad126c188108f7e7c468',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::default_overflow_limit()']]],
['default_5ftable_5fname',['default_table_name',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_accumulator_adaptor.html#a300d9c9d8f8ade46655850dd61771472',1,'Bio::EnsEMBL::Hive::DBSQL::AccumulatorAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_adaptor.html#a50439fb73efbfd5e2ec3cfd8839c483c',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_ctrl_rule_adaptor.html#aa39019f2695173ed4d98c1e46277c1f7',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisCtrlRuleAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_data_adaptor.html#a32effe05fbc822b45f5505997faab25c',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_job_adaptor.html#a0c5b6bbd627a70f5d1eb35b24b6e2d91',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_analysis_stats_adaptor.html#a7d096d983b7596fa83094ebbb8ebb06a',1,'Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#ae3e95ef6cee275aa2ace188e45da854a',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_dataflow_rule_adaptor.html#a1ef36bbed301036800367e22c6895f13',1,'Bio::EnsEMBL::Hive::DBSQL::DataflowRuleAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_log_message_adaptor.html#a9c5a35a90a18728182e12a66503ced26',1,'Bio::EnsEMBL::Hive::DBSQL::LogMessageAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_meta_adaptor.html#afee7422722307560e830dd17c7065993',1,'Bio::EnsEMBL::Hive::DBSQL::MetaAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_meta_container.html#a2b2f74be0c9bbc3330a2bfa1c97c5e99',1,'Bio::EnsEMBL::Hive::DBSQL::MetaContainer::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_resource_class_adaptor.html#ad87ef629a730873721e4486ab5176fd0',1,'Bio::EnsEMBL::Hive::DBSQL::ResourceClassAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_resource_description_adaptor.html#a06ce8d0d67b24247c234a7a9637a3b09',1,'Bio::EnsEMBL::Hive::DBSQL::ResourceDescriptionAdaptor::default_table_name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_queen.html#a545edfa6d9aa715376d5ed7d20767755',1,'Bio::EnsEMBL::Hive::Queen::default_table_name()']]],
['description',['description',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_limiter.html#afea6647d740defa4fe2f636cd24b02cd',1,'Bio::EnsEMBL::Hive::Limiter']]],
['destringify',['destringify',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils.html#ac3350cd70c4187290ded88a59533e62d',1,'Bio::EnsEMBL::Hive::Utils']]],
['destroy',['DESTROY',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#aeac6bf08072f89a153165ea39b8ed7a1',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::DESTROY()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_u_r_l_factory.html#acf08a2e7774e3dcc8643f8703d068c6a',1,'Bio::EnsEMBL::Hive::URLFactory::DESTROY()']]],
['destroy',['DESTROY',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#aeac6bf08072f89a153165ea39b8ed7a1',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::DESTROY()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#a4c6a46498a51f69c34e087b26c43157b',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::DESTROY()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_statement_handle.html#a837ba155a662306e7cbd285fe0970269',1,'Bio::EnsEMBL::Hive::DBSQL::StatementHandle::DESTROY()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_u_r_l_factory.html#acf08a2e7774e3dcc8643f8703d068c6a',1,'Bio::EnsEMBL::Hive::URLFactory::DESTROY()']]],
['determine_5fstatus',['determine_status',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#a2f551acaf61aa9bf888e5d2246002170',1,'Bio::EnsEMBL::Hive::AnalysisStats']]],
['died',['died',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#abd46b21982209917b8fbace6d01ac0a5',1,'Bio::EnsEMBL::Hive::Worker']]],
['dir_5frevhash',['dir_revhash',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils.html#a8c682e65730f8bb07e2d6274958b640d',1,'Bio::EnsEMBL::Hive::Utils']]],
['disconnect_5fcount',['disconnect_count',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a69ef6c7a72bc1ef00fbb690fb6382823',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['disconnect_5fif_5fidle',['disconnect_if_idle',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a4a9d2cfe84a134fdf678ba566582bf5f',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['disconnect_5fwhen_5finactive',['disconnect_when_inactive',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#ac11755609bcdb2855feb9ac1ffb2b22f',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['display_5fsubgraph',['display_subgraph',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_graph_viz.html#af99b2f612b6d9e52dbbf721c0993c746',1,'Bio::EnsEMBL::Hive::Utils::GraphViz']]],
['done_5fjob_5fcount',['done_job_count',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#a8cbcb7b573a6c3277ac69456dca161fa',1,'Bio::EnsEMBL::Hive::AnalysisStats']]]
['do',['do',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a0dc722d1dd6516ad7ed6d4df2f2b461d',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['done_5fjob_5fcount',['done_job_count',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#a8cbcb7b573a6c3277ac69456dca161fa',1,'Bio::EnsEMBL::Hive::AnalysisStats']]],
['driver',['driver',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a497b676b381ee418552294fbe96defbd',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]]
];
var searchData=
[
['enter_5fstatus',['enter_status',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a2344d158b5ca1a21fa9975fd424a3e6b',1,'Bio::EnsEMBL::Hive::Process::enter_status()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#a13e1e3b2aa2905efe3f7dfef55019d2c',1,'Bio::EnsEMBL::Hive::Worker::enter_status()']]],
['equals',['equals',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a4942dd4cf65e6e94ac8a3135853e4314',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['execute_5fwrites',['execute_writes',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#a2172d0e9d3014f2ef8f117176904fde3',1,'Bio::EnsEMBL::Hive::Process::execute_writes()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#acc3848e02dd266ca7c193257ec036701',1,'Bio::EnsEMBL::Hive::Worker::execute_writes()']]]
];
......@@ -26,5 +26,7 @@ var searchData=
['find_5fsubmodules',['find_submodules',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils.html#a487b583d13e668734c35bcff7e427d9b',1,'Bio::EnsEMBL::Hive::Utils']]],
['from_5fanalysis',['from_analysis',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dataflow_rule.html#ad8140faa5aec71033ae2cc3e69571246',1,'Bio::EnsEMBL::Hive::DataflowRule']]],
['from_5fanalysis_5fid',['from_analysis_id',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dataflow_rule.html#ac13454a4f86e556f82560a7f2967fc53',1,'Bio::EnsEMBL::Hive::DataflowRule']]],
['from_5fdate_5fto_5fseconds',['from_date_to_seconds',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#aa3d9aebeba7a86e48cc7c1ebe2934b27',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['from_5fseconds_5fto_5fdate',['from_seconds_to_date',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a7abaf113d8686eaa7112c6fe9616dd99',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['funnel_5fdataflow_5frule_5fid',['funnel_dataflow_rule_id',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dataflow_rule.html#aec851945dd9ebf3652224066b8d271e8',1,'Bio::EnsEMBL::Hive::DataflowRule']]]
];
......@@ -4,6 +4,7 @@ var searchData=
['generate_5fjob_5fname',['generate_job_name',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_meadow.html#ab8b9ebeacf07bfcb38851edbfdd0ae2f',1,'Bio::EnsEMBL::Hive::Meadow']]],
['generate_5fworker_5fcmd',['generate_worker_cmd',['../beekeeper_8pl.html#ad7de8680eb8b39e160cee04957ccd668',1,'beekeeper.pl']]],
['get',['get',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_config.html#a61b3f0cfb4fb961204ed1be500a6443e',1,'Bio::EnsEMBL::Hive::Utils::Config']]],
['get_5fadaptor',['get_adaptor',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#ac50992c26731998113b658c9679611c3',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor']]],
['get_5fanalysis',['get_analysis',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#ab3a0f109fab512fdae003e708d4c28df',1,'Bio::EnsEMBL::Hive::AnalysisStats']]],
['get_5favailable_5fadaptors',['get_available_adaptors',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#a0baccc85ec9695e7ffa80c16d54cb9d9',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor']]],
['get_5favailable_5fmeadow_5flist',['get_available_meadow_list',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_valley.html#a77f0a0b7a8de56d43c0271065bef6ebe',1,'Bio::EnsEMBL::Hive::Valley']]],
......
......@@ -5,5 +5,6 @@ var searchData=
['hive_5fmeta_5ftable',['hive_meta_table',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_hive_generic__conf.html#a35edd8ed45d8aea1de4f5c5124455a21',1,'Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf::hive_meta_table()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_pipe_config_1_1_long_mult_st__conf.html#a354e9305c82d67b99b5d0b159f2382db',1,'Bio::EnsEMBL::Hive::PipeConfig::LongMultSt_conf::hive_meta_table()']]],
['hive_5fuse_5fparam_5fstack',['hive_use_param_stack',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#a364f93a3a3019a023c09f7fd02313970',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor']]],
['hive_5fuse_5ftriggers',['hive_use_triggers',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#a5169045d2592861884a452dec9f3dd06',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor']]],
['host',['host',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#a3bf4200e3a8a6603db7ef6a544df3356',1,'Bio::EnsEMBL::Hive::Worker']]]
['host',['host',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a52db0b1ea34968d7f823d74aa6de462a',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection::host()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#a3bf4200e3a8a6603db7ef6a544df3356',1,'Bio::EnsEMBL::Hive::Worker::host()']]],
['hostname',['hostname',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a716c1f4c6dab3f80cb8ba46fb95b2835',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]]
];
......@@ -10,6 +10,7 @@ var searchData=
['load_5fcmdline_5foptions',['load_cmdline_options',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dependent_options.html#ac036ce35e64d7310b44481136fad5b18',1,'Bio::EnsEMBL::Hive::DependentOptions']]],
['load_5ffile_5for_5fmodule',['load_file_or_module',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils.html#a1956b39203f4df86e8d7aac981462ee5',1,'Bio::EnsEMBL::Hive::Utils']]],
['load_5ffrom_5fjson',['load_from_json',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_config.html#a4d561e831fd88920ca38ba78582a7f93',1,'Bio::EnsEMBL::Hive::Utils::Config']]],
['locator',['locator',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a33c540b343d16f5f0f00247c692d1752',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection']]],
['log_5fdir',['log_dir',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#a2ddf6136f8b9cb3fca032b2ba6f152ff',1,'Bio::EnsEMBL::Hive::Worker']]],
['logic_5fname',['logic_name',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis.html#a6528be48120416c630abe32227e70bdb',1,'Bio::EnsEMBL::Hive::Analysis']]]
];
var searchData=
[
['name',['name',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_meadow_1_1_l_o_c_a_l.html#a822009e9a5c178598aa5125475b95f18',1,'Bio::EnsEMBL::Hive::Meadow::LOCAL::name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_meadow_1_1_l_s_f.html#a8be5f1cdaa5eb9e07fc29610e678f836',1,'Bio::EnsEMBL::Hive::Meadow::LSF::name()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_resource_class.html#a4483fbceef09b5b032c54b797fdb73d9',1,'Bio::EnsEMBL::Hive::ResourceClass::name()']]],
['new',['new',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_accumulator.html#ac035312016653df35c35398474835764',1,'Bio::EnsEMBL::Hive::Accumulator::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis.html#ad61a51a522d45f6a30e2a596b5165524',1,'Bio::EnsEMBL::Hive::Analysis::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_ctrl_rule.html#a22338588d57d7bf475159a73b4fb10da',1,'Bio::EnsEMBL::Hive::AnalysisCtrlRule::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_job.html#abb83a9f0a1fa1cd38bc5ae626bfd6b51',1,'Bio::EnsEMBL::Hive::AnalysisJob::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#a63bec749348099898cac9401d6af959b',1,'Bio::EnsEMBL::Hive::AnalysisStats::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dataflow_rule.html#af8321e0eec4a4057a4d103400e549df3',1,'Bio::EnsEMBL::Hive::DataflowRule::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#abf2b541c5d7e3b124323a34356e3ace6',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dependent_options.html#a729f524427ef5292b7e980f134aa456f',1,'Bio::EnsEMBL::Hive::DependentOptions::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_limiter.html#a89203ff40a85e13c7ef840a46dcf4487',1,'Bio::EnsEMBL::Hive::Limiter::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_meadow.html#abaa21c35b875562cdf4258eee1b717b3',1,'Bio::EnsEMBL::Hive::Meadow::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_naked_table.html#a86e40bedaa4255b62bb61b92e1b663c8',1,'Bio::EnsEMBL::Hive::NakedTable::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_params.html#a5be508c964ea50f555fbd9692a226f67',1,'Bio::EnsEMBL::Hive::Params::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#ae2f3da1c5a538fc990739595101bbfc5',1,'Bio::EnsEMBL::Hive::Process::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_resource_class.html#a76ab34ac067611e361c72614a8156cb7',1,'Bio::EnsEMBL::Hive::ResourceClass::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_resource_description.html#a182572a7a902208f7b78653dbca05fa4',1,'Bio::EnsEMBL::Hive::ResourceDescription::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_u_r_l_factory.html#ab067dc5c5216255309138355ecb085ee',1,'Bio::EnsEMBL::Hive::URLFactory::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_config.html#ae74fdb113363f2f412a30ce66d1651e3',1,'Bio::EnsEMBL::Hive::Utils::Config::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_graph.html#a0452e8098246f27173059b14600f190c',1,'Bio::EnsEMBL::Hive::Utils::Graph::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_redirect_stack.html#a11b71d1d7802b7c52d23f49b8dab377c',1,'Bio::EnsEMBL::Hive::Utils::RedirectStack::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_stopwatch.html#a1cbc5b3e6c40f0a5862e55e228dc34a3',1,'Bio::EnsEMBL::Hive::Utils::Stopwatch::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_valley.html#a51140e4714459dccef65cb34d97bfe13',1,'Bio::EnsEMBL::Hive::Valley::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_worker.html#ac85bb24d028f6a102654f3fdbadf4c74',1,'Bio::EnsEMBL::Hive::Worker::new()']]],
['new',['new',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#ac927d7b53cdbc9497b9dd501cbfa5cc1',1,'Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_core_d_b_connection.html#a293fae7f0ab19f7fc708fb5b507ba148',1,'Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_adaptor.html#abf2b541c5d7e3b124323a34356e3ace6',1,'Bio::EnsEMBL::Hive::DBSQL::DBAdaptor::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_d_b_connection.html#a7931542229862db93f899aef0eb983f0',1,'Bio::EnsEMBL::Hive::DBSQL::DBConnection::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_dependent_options.html#a729f524427ef5292b7e980f134aa456f',1,'Bio::EnsEMBL::Hive::DependentOptions::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_limiter.html#a89203ff40a85e13c7ef840a46dcf4487',1,'Bio::EnsEMBL::Hive::Limiter::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_meadow.html#abaa21c35b875562cdf4258eee1b717b3',1,'Bio::EnsEMBL::Hive::Meadow::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_params.html#a5be508c964ea50f555fbd9692a226f67',1,'Bio::EnsEMBL::Hive::Params::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#ae2f3da1c5a538fc990739595101bbfc5',1,'Bio::EnsEMBL::Hive::Process::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable.html#a52efcf0d0755525a7bc059b68442c620',1,'Bio::EnsEMBL::Hive::Storable::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_u_r_l_factory.html#ab067dc5c5216255309138355ecb085ee',1,'Bio::EnsEMBL::Hive::URLFactory::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_config.html#ae74fdb113363f2f412a30ce66d1651e3',1,'Bio::EnsEMBL::Hive::Utils::Config::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_graph.html#a0452e8098246f27173059b14600f190c',1,'Bio::EnsEMBL::Hive::Utils::Graph::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_redirect_stack.html#a11b71d1d7802b7c52d23f49b8dab377c',1,'Bio::EnsEMBL::Hive::Utils::RedirectStack::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_utils_1_1_stopwatch.html#a1cbc5b3e6c40f0a5862e55e228dc34a3',1,'Bio::EnsEMBL::Hive::Utils::Stopwatch::new()'],['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_valley.html#a51140e4714459dccef65cb34d97bfe13',1,'Bio::EnsEMBL::Hive::Valley::new()']]],
['num_5frequired_5fworkers',['num_required_workers',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#a0f14ca66c121617e2e6a4f2f7327caa1',1,'Bio::EnsEMBL::Hive::AnalysisStats']]],
['num_5frunning_5fworkers',['num_running_workers',['../class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_stats.html#ae2ece1ac33d251baa674803832bdae70',1,'Bio::EnsEMBL::Hive::AnalysisStats']]]
];
......@@ -8,7 +8,7 @@
var indexSectionsWithContent =
{
0: "_abcdefghijklmnopqrstuvw",
1: "abcdfghjlmnopqrstuvw",
1: "abcdefghjlmnopqrstuvw",
2: "b",
3: "abcdefghijlmnopqrstuvw",
4: "_abcdefghijklmnopqrstuw",
......
......@@ -30,7 +30,7 @@
<tr style="height: 56px;">
<td style="padding-left: 0.5em;">
<div id="projectname">ensembl-hive
&#160;<span id="projectnumber">1.9</span>
&#160;<span id="projectnumber">2.0</span>
</div>
</td>
</tr>
......@@ -177,7 +177,7 @@ Functions</h2></td></tr>
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="navelem"><a class="el" href="dir_5fc43faac24a7b81dcfb81b231064839.html">scripts</a></li><li class="navelem"><a class="el" href="seed__pipeline_8pl.html">seed_pipeline.pl</a></li>
<li class="navelem"><a class="el" href="dir_54316937a66070d9897b24579a7d39ac.html">scripts</a></li><li class="navelem"><a class="el" href="seed__pipeline_8pl.html">seed_pipeline.pl</a></li>
<li class="footer">Generated by
<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.6 </li>
......
......@@ -30,7 +30,7 @@
<tr style="height: 56px;">
<td style="padding-left: 0.5em;">
<div id="projectname">ensembl-hive
&#160;<span id="projectnumber">1.9</span>
&#160;<span id="projectnumber">2.0</span>
</div>
</td>
</tr>
......@@ -112,7 +112,7 @@ $(document).ready(function(){initNavTree('standalone_job_8pl.html','');});
<!-- start footer part -->
<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
<ul>
<li class="navelem"><a class="el" href="dir_5fc43faac24a7b81dcfb81b231064839.html">scripts</a></li><li class="navelem"><a class="el" href="standalone_job_8pl.html">standaloneJob.pl</a></li>
<li class="navelem"><a class="el" href="dir_54316937a66070d9897b24579a7d39ac.html">scripts</a></li><li class="navelem"><a class="el" href="standalone_job_8pl.html">standaloneJob.pl</a></li>
<li class="footer">Generated by
<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.6 </li>
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment