<divclass="line"><spanclass="preprocessor"> # ok this is a hack, but I'm going to pretend I've got an object here</span></div>
<divclass="line"><spanclass="preprocessor"></span><spanclass="preprocessor"> # by creating a hash ref and passing it around like an object</span></div>
<divclass="line"> my $species = Bio::EnsEMBL::Registry->get_alias($reg_alias)</div>
...
...
@@ -1163,17 +1164,17 @@ Functions</h2></td></tr>
<divclass="line"> warn <spanclass="stringliteral">"Since -input_id has not been set, assuming input_id='$input_id'\n"</span>;</div>
<divclass="line"> }</div>
<divclass="line"></div>
<divclass="line"> my $job = <aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_job.html">Bio::EnsEMBL::Hive::AnalysisJob</a>-><aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_job.html#abb83a9f0a1fa1cd38bc5ae626bfd6b51">new</a>(</div>
<divclass="line">-prev_job_id => undef, # <spanclass="keyword">this</span> job has been created by the initialization script, not by another job</div>
<divclass="line">-input_id => destringify( $input_id ), # Make sure all job creations undergo re-stringification to avoid alternative <spanclass="stringliteral">"spellings"</span> of the same input_id hash</div>
<divclass="line"> my $job = <aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis_job.html">Bio::EnsEMBL::Hive::AnalysisJob</a>-><aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable.html#a52efcf0d0755525a7bc059b68442c620">new</a>(</div>
<divclass="line"><spanclass="stringliteral">'prev_job_id'</span> => undef, # <spanclass="keyword">this</span> job has been created by the initialization script, not by another job</div>
<divclass="line"><spanclass="stringliteral">'input_id'</span> => destringify( $input_id ), # Make sure all job creations undergo re-stringification to avoid alternative <spanclass="stringliteral">"spellings"</span> of the same input_id hash</div>
<p>This is the complete list of members for <aclass="el"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_accumulator.html">Bio::EnsEMBL::Hive::Accumulator</a>, including all inherited members.</p>
<trclass="inherit_header pub_methods_class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable"><tdcolspan="2"onclick="javascript:toggleInherit('pub_methods_class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable')"><imgsrc="closed.png"alt="-"/> Public Member Functions inherited from <aclass="el"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable.html">Bio::EnsEMBL::Hive::Storable</a></td></tr>
<p>This is the complete list of members for <aclass="el"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_analysis.html">Bio::EnsEMBL::Hive::Analysis</a>, including all inherited members.</p>
<trclass="inherit_header pub_methods_class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable"><tdcolspan="2"onclick="javascript:toggleInherit('pub_methods_class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable')"><imgsrc="closed.png"alt="-"/> Public Member Functions inherited from <aclass="el"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable.html">Bio::EnsEMBL::Hive::Storable</a></td></tr>
<divclass="line"> my $runnable_object = $self->get_compiled_module_name-><aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#ae2f3da1c5a538fc990739595101bbfc5">new</a>( -analysis => $self );</div>
<divclass="line"> my $runnable_object = $self->get_compiled_module_name-><aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_process.html#ae2f3da1c5a538fc990739595101bbfc5">new</a>();</div>
<divclass="line"><spanclass="preprocessor"> # Not cached internally since we want it to always be in sync with the database.</span></div>
<divclass="line"><spanclass="preprocessor"></span><spanclass="preprocessor"> # Otherwise the user application would need to be aware of the sync state and send explicit 'sync' calls.</span></div>
<divclass="line"> my $stats = $self->adaptor->db->get_AnalysisStatsAdaptor->fetch_by_analysis_id($self->dbID);</div>
<divclass="line"> my $stats = $self-><aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_storable.html#ae3ce63575f76820319b7eaf0d22659e0">adaptor</a>-><aclass="code"href="class_bio_1_1_ens_e_m_b_l_1_1_hive_1_1_d_b_s_q_l_1_1_base_adaptor.html#a020d1ee154f436e472e855e746b5467d">db</a>->get_AnalysisStatsAdaptor->fetch_by_analysis_id($self->dbID);</div>
