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ensembl-gh-mirror
ensembl-hive
Commits
4c5a751d
Commit
4c5a751d
authored
Apr 25, 2017
by
Leo Gordon
Browse files
no longer needed since visualize_jobs.t can now reproduce the same output
parent
6b111307
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docs/long_mult_walkthrough/long_mult_generate_snapshots.sh
docs/long_mult_walkthrough/long_mult_generate_snapshots.sh
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docs/long_mult_walkthrough/long_mult_generate_snapshots.sh
deleted
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View file @
6b111307
#!/bin/bash
# Generate all those snapshots in a deterministic way:
export
PIPELINE_URL
=
sqlite:///lg4_long_mult.sqlite
export
VJ_OPTIONS
=
"-values"
init_pipeline.pl Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMult_conf
-pipeline_url
$PIPELINE_URL
-take_time
0
-hive_force_init
1
export
NUM
=
01
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
1
beekeeper.pl
-url
$PIPELINE_URL
-analyses_pattern
add_together
-sync
export
NUM
=
02
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-analyses_pattern
take_b_apart
beekeeper.pl
-url
$PIPELINE_URL
-analyses_pattern
add_together
-sync
export
NUM
=
03
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
4
export
NUM
=
04
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
10
runWorker.pl
-url
$PIPELINE_URL
-job_id
11
export
NUM
=
05
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
5
runWorker.pl
-url
$PIPELINE_URL
-job_id
6
export
NUM
=
06
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
8
runWorker.pl
-url
$PIPELINE_URL
-job_id
12
beekeeper.pl
-url
$PIPELINE_URL
-analyses_pattern
add_together
-sync
export
NUM
=
07
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
9
beekeeper.pl
-url
$PIPELINE_URL
-analyses_pattern
add_together
-sync
export
NUM
=
08
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
7
beekeeper.pl
-url
$PIPELINE_URL
-sync
export
NUM
=
09
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
runWorker.pl
-url
$PIPELINE_URL
-job_id
3
beekeeper.pl
-url
$PIPELINE_URL
-sync
export
NUM
=
10
;
visualize_jobs.pl
-url
$PIPELINE_URL
$VJ_OPTIONS
-out
long_mult_jobs_
${
NUM
}
.png
;
generate_graph.pl
-url
$PIPELINE_URL
-out
long_mult_analyses_
${
NUM
}
.png
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