Dockerfile for running Hive scripts in a container, also the base for guiHive container

docker/Dockerfile

+# This is a Dockerfile to run eHive scripts (init_pipeline.pl, beekeeper.pl, runWorker.pl) in a container
+#
+# docker build -t ensembl-hive .
+#
+# docker run -it -e PATH=/repo/ensembl-hive/scripts:/bin:/usr/bin:/usr/local/bin:/sbin:/usr/sbin:/usr/local/sbin ensembl-hive		# assume bash 
+# docker run -it -e PATH=/repo/ensembl-hive/scripts:/bin:/usr/bin:/usr/local/bin:/sbin:/usr/sbin:/usr/local/sbin ensembl-hive init_pipeline.pl Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMult_conf -pipeline_url $URL
+# docker run -it -e PATH=/repo/ensembl-hive/scripts:/bin:/usr/bin:/usr/local/bin:/sbin:/usr/sbin:/usr/local/sbin ensembl-hive beekeeper.pl -url $URL -loop -sleep 0.2
+# docker run -it -e PATH=/repo/ensembl-hive/scripts:/bin:/usr/bin:/usr/local/bin:/sbin:/usr/sbin:/usr/local/sbin ensembl-hive runWorker.pl -url $URL
+
+
+FROM ubuntu:16.04
+
+RUN mkdir /repo
+
+RUN apt-get update -y \
+ && apt-get install git build-essential curl sqlite3 mysql-client libmariadb-client-lgpl-dev libpq-dev libexpat1-dev graphviz -y \
+ && apt-get install netcat.openbsd vim perl-doc -y \
+ && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# RUN apt-get install iputils-ping net-tools apt-file -y
+
+RUN ln -s /usr/bin/mariadb_config /usr/bin/mysql_config
+
+RUN curl -L https://cpanmin.us | perl - App::cpanminus
+
+RUN cd /repo ; git clone https://github.com/Ensembl/ensembl-hive.git
+
+RUN cd /repo/ensembl-hive ; git checkout master
+
+RUN cpanm --installdeps --with-recommends /repo/ensembl-hive
+
+	# for the processes you run in an interactive bash
+RUN echo "export PATH=$PATH:/repo/ensembl-hive/scripts" >>/root/.bashrc
+
+CMD [ "/bin/bash" ]