Commit 61452aae authored by Leo Gordon's avatar Leo Gordon
Browse files

new changes for the pre-rel69 version

parent 6fe23a89
......@@ -15,6 +15,121 @@ Summary:
Changelog:
---------------------[before EnsEMBL rel.69]----------------------------------------------------------------
2012-08-01 14:23 lg4
* scripts/: runWorker.pl, standaloneJob.pl: removed the alternative
"nowrite" spelling to simplify interface
2012-07-31 17:01 lg4
* modules/Bio/EnsEMBL/Hive/Process.pm,
modules/Bio/EnsEMBL/Hive/Worker.pm, scripts/standaloneJob.pl:
made it possible for a standaloneJob to provide Runnables with a
functional worker_temp_directory()
2012-07-31 16:15 lg4
* modules/Bio/EnsEMBL/Hive/Worker.pm: moved life_cycle() from
Worker.pm into Process.pm and now also calling it from
standaloneJob.pl (actually removed from Worker)
2012-07-31 16:13 lg4
* modules/Bio/EnsEMBL/Hive/Process.pm,
modules/Bio/EnsEMBL/Hive/Worker.pm, scripts/standaloneJob.pl:
moved life_cycle() from Worker.pm into Process.pm and now also
calling it from standaloneJob.pl
2012-07-25 16:30 lg4
* modules/Bio/EnsEMBL/Hive/Worker.pm: only add partial timers'
measurement if the job completed successfully
2012-07-24 16:48 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm: if running
a worker with a specific job_id, the status is set to READY, but
the retry_count is set depending on whether PRE_CLEANUP is needed
or not
2012-07-24 16:17 lg4
* modules/Bio/EnsEMBL/Hive/Process.pm,
modules/Bio/EnsEMBL/Hive/Worker.pm,
modules/Bio/EnsEMBL/Hive/RunnableDB/FailureTest.pm,
sql/patch_2012-07-23.sql, sql/tables.sql: added two states,
PRE_CLEANUP (conditional) and POST_CLEANUP (unconditional) to the
life cycle of the Job
2012-07-23 16:49 lg4
* modules/Bio/EnsEMBL/Hive/Worker.pm,
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm,
modules/Bio/EnsEMBL/Hive/RunnableDB/FailureTest.pm,
scripts/standaloneJob.pl, sql/patch_2012-07-22.sql,
sql/tables.sql, sql/tables.sqlite: At last rename GET_INPUT into
FETCH_INPUT for consistency between the schema and the code (it
seems to be harder to patch all the accumulated code)
2012-07-23 12:13 lg4
* modules/Bio/EnsEMBL/Hive/Queen.pm,
modules/Bio/EnsEMBL/Hive/Worker.pm, scripts/beekeeper.pl,
scripts/runWorker.pl: added -compile_modules_once flag to test
the new (slightly faster and more logical) approach
2012-07-16 17:54 mm14
* scripts/lsf_report.pl: rc_id renamed to resource_class_id
2012-07-03 12:06 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm,
scripts/beekeeper.pl: fixed reset_failed_jobs/reset_all_jobs and
removed remove_analysis_id
2012-06-29 14:20 lg4
* docs/hive_schema.mwb, docs/hive_schema.png,
modules/Bio/EnsEMBL/Hive/AnalysisStats.pm,
modules/Bio/EnsEMBL/Hive/Queen.pm,
modules/Bio/EnsEMBL/Hive/ResourceDescription.pm,
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm,
modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm,
scripts/beekeeper.pl, sql/foreign_keys.mysql,
sql/patch_2012-06-29.sql, sql/tables.sql, sql/tables.sqlite:
replaced rc_id by resource_class_id throughout the schema and
added the foreign keys on resource_class_id
2012-06-29 09:41 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm: support
'default' as the default resource class (if none is defined) and
create the 'default' rc even if not defined in PipeConfig
2012-06-27 16:17 lg4
* modules/Bio/EnsEMBL/Hive/: AnalysisJob.pm,
DBSQL/AnalysisJobAdaptor.pm: simplified logic that controls how
semaphores are propagates (preparing for semaphore escaping rule
support)
2012-06-26 20:53 lg4
* sql/tables.sql: to please MySQL Workbench (does not like boolean,
does not like leading newlines)
2012-06-26 17:02 mm14
* sql/procedures.mysql: resource_description is still there
2012-06-26 16:28 mm14
* sql/procedures.mysql: Added resource_class to the list of removed
tables
---------------------[during EnsEMBL rel.68]----------------------------------------------------------------
2012-06-26 12:58 lg4
......
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