From 61be99bb43c94bf4c41047496917f1b69ff46ab3 Mon Sep 17 00:00:00 2001
From: Leo Gordon <lg4@ebi.ac.uk>
Date: Mon, 28 Nov 2011 09:57:17 +0000
Subject: [PATCH] making sure semaphores are correctly propagated through
gc_dataflow and PASSED_ON state
---
modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm b/modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
index 62e0d73dc..c8bf32f81 100644
--- a/modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
+++ b/modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm
@@ -665,6 +665,10 @@ sub gc_dataflow {
$job->dataflow_output_id( $job->input_id() , $branch_name );
$job->update_status('PASSED_ON');
+
+ if(my $semaphored_job_id = $job->semaphored_job_id) {
+ $self->decrease_semaphore_count_for_jobid( $semaphored_job_id ); # step-unblock the semaphore
+ }
return 1;
}
--
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