sqlite has views but not procedures

modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm

@@ -97,6 +97,7 @@ sub pipeline_create_commands {
         ? [
                 # standard eHive tables and unique/non-unique indices:
             $self->db_connect_command($db_conn).' <'.$self->o('ensembl_cvs_root_dir').'/ensembl-hive/sql/tables.sqlite',
+            $self->db_connect_command($db_conn).' <'.$self->o('ensembl_cvs_root_dir').'/ensembl-hive/sql/procedures.sqlite',
         ]
         : [
             'mysql '.$self->dbconn_2_mysql($db_conn, 0)." -e 'CREATE DATABASE ".$self->o('pipeline_db', '-dbname')."'",

sql/procedures.sqlite

+-- ------------------------------------------------------------------------------------------------------
+--
+-- Some stored functions, views and procedures used in hive:
+--
+
+
+-- --- show hive progress for analyses (turned into a view to give extra flexibility) -------------------
+--
+-- Thanks to Greg Jordan for the idea and the original version
+--
+-- Usage:
+--       select * from progress;                                         # the whole table (may take ages to generate, depending on the size of your pipeline)
+--       select * from progress where logic_name like 'family_blast%';   # only show family_blast-related analyses
+--       select * from progress where retry_count>1;                     # only show jobs that have been tried more than once
+
+CREATE VIEW IF NOT EXISTS progress AS
+    SELECT a.logic_name || '(' || a.analysis_id || ')' analysis_name_and_id, j.status, j.retry_count, count(*) cnt, job_id example_job_id
+    FROM analysis a LEFT JOIN job j USING (analysis_id)
+    GROUP BY a.analysis_id, j.status, j.retry_count
+    ORDER BY a.analysis_id, j.status;
+
+
+-- a convenient view that also incorporates (otherwise redundant) analysis_id and logic_name ------------
+--
+-- Usage:
+--       select * from msg;
+--       select * from msg where analysis_id=18;
+--       select * from msg where logic_name like 'family_blast%';
+
+CREATE VIEW IF NOT EXISTS msg AS
+    SELECT a.analysis_id, a.logic_name, m.*
+    FROM job_message m
+    JOIN job j USING (job_id)
+    JOIN analysis a USING (analysis_id);
+