From 7aa94f233517da73ee548954cf752290b62198ab Mon Sep 17 00:00:00 2001
From: Javier Herrero <jherrero@ebi.ac.uk>
Date: Fri, 17 Mar 2006 12:52:50 +0000
Subject: [PATCH] Added: allows to run a particular job only
---
scripts/beekeeper.pl | 17 ++++++++++++-----
1 file changed, 12 insertions(+), 5 deletions(-)
diff --git a/scripts/beekeeper.pl b/scripts/beekeeper.pl
index f32d1bbb7..42bbf13ec 100755
--- a/scripts/beekeeper.pl
+++ b/scripts/beekeeper.pl
@@ -57,6 +57,7 @@ GetOptions('help' => \$help,
'overdue' => \$self->{'overdue_limit'},
'alldead' => \$self->{'all_dead'},
'run' => \$self->{'run'},
+ 'run_job_id=i' => \$self->{'run_job_id'},
'jlimit=i' => \$job_limit,
'wlimit=i' => \$worker_limit,
'batch_size=i' => \$batch_size,
@@ -84,7 +85,7 @@ if($local) {
parse_conf($self, $conf_file);
-if($self->{'run'}) {
+if($self->{'run'} or $self->{'run_job_id'}) {
$loopit = 1;
$self->{'max_loops'} = 1;
}
@@ -193,6 +194,7 @@ sub usage {
print " -overdue <min> : worker overdue minutes checking if dead\n";
print " -alldead : all outstanding workers\n";
print " -run : run 1 iteration of automation loop\n";
+ print " -run_job_id <job_id> : run 1 iteration for this job_id\n";
print " -loop : run autonomously, loops and sleeps\n";
print " -local : run jobs on local CPU (fork)\n";
print " -lsf : run jobs on LSF compute resource (bsub)\n";
@@ -460,12 +462,17 @@ sub run_autonomously {
$count = $worker_limit if($count>$worker_limit);
my $logic_name = $self->{'logic_name'};
- if ($count>0) {
+ if ($count>0 or $self->{'run_job_id'}) {
print("need $count workers\n");
$worker_cmd = "runWorker.pl -bk ". $self->{'beekeeper_type'};
- $worker_cmd .= " -limit $job_limit" if(defined $job_limit);
- $worker_cmd .= " -batch_size $batch_size" if(defined $batch_size);
- $worker_cmd .= " -logic_name $logic_name" if(defined $logic_name);
+ if ($self->{'run_job_id'}) {
+ $worker_cmd .= " -job_id ".$self->{'run_job_id'};
+ $count = 1; # Avoid to run more than 1 worker!
+ } else {
+ $worker_cmd .= " -limit $job_limit" if(defined $job_limit);
+ $worker_cmd .= " -batch_size $batch_size" if(defined $batch_size);
+ $worker_cmd .= " -logic_name $logic_name" if(defined $logic_name);
+ }
if ($regfile) {
$worker_cmd .= " -regfile $regfile -regname $reg_alias";
--
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