Commit 81616a4e authored by Leo Gordon's avatar Leo Gordon
Browse files

latest Changelog incorporated

parent 479e5459
......@@ -15,6 +15,204 @@ Summary:
Changelog:
---------------------[during EnsEMBL rel.68]----------------------------------------------------------------
2012-06-26 12:58 lg4
* modules/Bio/EnsEMBL/Hive/Worker.pm: fixed a bug where job failed
in COMPILATION state were still set to DONE status
2012-06-26 11:22 lg4
* modules/Bio/EnsEMBL/Hive/Meadow.pm,
modules/Bio/EnsEMBL/Hive/Queen.pm, scripts/beekeeper.pl: slightly
improved output
2012-06-26 11:01 lg4
* modules/Bio/EnsEMBL/Hive/Worker.pm, scripts/beekeeper.pl: fixed
and cleaned up the code that outputs a list of workers
2012-06-25 16:00 lg4
* scripts/lsf_report.pl: untested version that corrects the
max(dead) by one minute to include the stats on the last worker
2012-06-22 12:51 mm14
* modules/Bio/EnsEMBL/Hive/Utils/Graph.pm: With the
"DisplayStretched" option on: now draws the mid-point of the
semaphores next to the boxes instead of under them
2012-06-22 11:51 mm14
* scripts/lsf_report.pl: Now accepts two parameters on the command
line: "start_date" and "end_date"
2012-06-22 11:44 mm14
* scripts/lsf_report.pl: bugfix: now works if the lines in the
bacct output do not start with a space
2012-06-19 16:12 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/: AnalysisJobAdaptor.pm,
AnalysisStatsAdaptor.pm: unnecessary uses
2012-06-15 16:43 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Graph.pm: making
_allocate_to_subgraph() a member function allows not to pass
$config as a parameter every time
2012-06-13 17:13 mm14
* hive_config.json, modules/Bio/EnsEMBL/Hive/Utils/Graph.pm: Added
an option to duplicate the tables and include them into their
parent boxes in the graphical output of the pipeline
2012-06-11 12:01 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm: removed
commented lines
2012-06-10 10:30 mm14
* modules/Bio/EnsEMBL/Hive/RunnableDB/DatabaseDumper.pm: Dies if
the db driver is not mysql + fixed a bug that prevented
"table_list" to be parsed
2012-06-08 20:28 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Graph.pm: group boxes based on
funnel rule's midpoint (more boxes)
2012-06-08 16:54 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm: fixed a
bug that looked like a feature
2012-06-08 15:46 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm: a
rc_id-less format of resource_classes() supported now; DO NOT
MIX!!!
2012-06-08 14:50 lg4
* sql/tables.sqlite: updated sqlite schema: added resource_class
and modified resource_description
2012-06-08 14:38 lg4
* sql/patch_2012-06-08.sql,
modules/Bio/EnsEMBL/Hive/ResourceDescription.pm,
modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm,
sql/tables.sql: splitting the resource_description table into two
2012-06-08 11:41 lg4
* modules/Bio/EnsEMBL/Hive/: ResourceClass.pm, DBSQL/DBAdaptor.pm,
DBSQL/ResourceClassAdaptor.pm: adding ResourceClass and
ResourceClassAdaptor
2012-06-08 11:03 lg4
* scripts/beekeeper.pl: print meadow->toString instead of
meadow->type
2012-06-06 21:07 lg4
* hive_config.json, modules/Bio/EnsEMBL/Hive/Utils/Graph.pm:
reorganized the "Graph" part of the config file
2012-06-01 16:00 lg4
* scripts/lsf_report.pl, sql/procedures.mysql: moved creation of
both 'lsf_report' table and 'lsf_usage' view into
scripts/lsf_report.pl
2012-06-01 15:40 lg4
* sql/procedures.mysql: added an SQL view over analysis, worker and
lsf_report tables to show analysis-wide resource usage stats
2012-06-01 15:34 mm14
* modules/Bio/EnsEMBL/Hive/RunnableDB/DatabaseDumper.pm: New
Runnable to create a snapshot of a database
2012-05-31 17:09 lg4
* hive_config.json, modules/Bio/EnsEMBL/Hive/Meadow.pm,
modules/Bio/EnsEMBL/Hive/Queen.pm,
modules/Bio/EnsEMBL/Hive/Valley.pm,
modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm,
modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm, scripts/beekeeper.pl:
moved
submit_workers_max/pending_adjust/total_workers_max/meadow_options
into Config, but they are still configurable from BK's
commandline via config_set(); lots of code cleanup on the way
2012-05-31 16:09 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Config.pm: now with a setter
function
2012-05-31 11:51 lg4
* modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm: only take the first
name, ignore the domain name altogether
2012-05-31 09:32 lg4
* scripts/: beekeeper.pl, runWorker.pl: removed references to old
config file as obsolete
2012-05-31 09:27 lg4
* scripts/beekeeper.pl: moved run_job_id into a separate variable
for clarity
2012-05-30 14:48 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Graph.pm: updated POD about
new()'s arguments
2012-05-30 14:38 lg4
* hive_config.json, modules/Bio/EnsEMBL/Hive/Utils/Graph.pm:
SemaphoreBoxes colours moved under "Colours" section
2012-05-30 14:30 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Config.pm,
modules/Bio/EnsEMBL/Hive/Utils/Graph.pm,
scripts/generate_graph.pl: A personal ~/.hive_config.json will be
merged in by default (overriding system defaults)
2012-05-30 12:25 lg4
* scripts/generate_graph.pl: removed reference to the deleted
Util::Graph::Config
2012-05-30 12:16 lg4
* hive_config.json, modules/Bio/EnsEMBL/Hive/Utils/Graph.pm,
modules/Bio/EnsEMBL/Hive/Utils/GraphViz.pm: allow configuring
boxes' colourscheme/offset from hive_config.json
2012-05-30 12:00 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Graph.pm,
scripts/generate_graph.pl: switching to using the new
configuration file+parser
2012-05-30 11:58 lg4
* hive_config.json, modules/Bio/EnsEMBL/Hive/Utils/Config.pm: a new
JSON-based configuration file and parser
---------------------[before EnsEMBL rel.68]----------------------------------------------------------------
2012-05-28 16:18 lg4
......
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