From 9180c90b3191fb396afe959f251fa11e2c9fabe7 Mon Sep 17 00:00:00 2001
From: Leo Gordon <lg4@ebi.ac.uk>
Date: Fri, 7 May 2010 22:30:10 +0000
Subject: [PATCH] now with param_substitute in all four sources
---
modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm b/modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm
index f4deed2d2..92f289d7f 100644
--- a/modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm
+++ b/modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm
@@ -1,3 +1,4 @@
+
=pod
=head1 NAME
@@ -88,10 +89,10 @@ sub run {
my $inputquery = $self->param('inputquery');
my $inputcmd = $self->param('inputcmd');
- my $list = $inputlist
- || ($inputfile && $self->_make_list_from_file($inputfile))
- || ($inputquery && $self->_make_list_from_query($inputquery))
- || ($inputcmd && $self->_make_list_from_cmd($inputcmd))
+ my $list = $self->param_substitute( $inputlist )
+ || ($inputfile && $self->_make_list_from_file( $self->param_substitute( $inputfile ) ))
+ || ($inputquery && $self->_make_list_from_query( $self->param_substitute( $inputquery ) ))
+ || ($inputcmd && $self->_make_list_from_cmd( $self->param_substitute( $inputcmd ) ))
|| die "range of values should be defined by setting 'inputlist', 'inputfile' or 'inputquery'";
if($randomize) {
--
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