Commit ae4a445f authored by Leo Gordon's avatar Leo Gordon
Browse files

cosmetic fixes, to match the 12July2010 talk slides

parent f5af1233
......@@ -72,18 +72,19 @@ sub default_options {
'pipeline_name' => 'long_mult', # name used by the beekeeper to prefix job names on the farm
'pipeline_db' => { # connection parameters
-host => 'compara1',
-host => 'compara2',
-port => 3306,
-user => 'ensadmin',
-pass => $self->o('password'), # a rule where a previously undefined parameter is used (which makes either of them obligatory)
-dbname => $ENV{USER}.'_'.$self->o('pipeline_name'), # a rule where a previously defined parameter is used (which makes both of them optional)
},
'first_mult' => '9650516169', # the actual numbers that will be multiplied must also be possible to specify from the command line
'first_mult' => '9650156169', # the actual numbers that will be multiplied must also be possible to specify from the command line
'second_mult' => '327358788',
};
}
=head2 pipeline_create_commands
Description : Implements pipeline_create_commands() interface method of Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf that lists the commands that will create and set up the Hive database.
......@@ -102,6 +103,7 @@ sub pipeline_create_commands {
];
}
=head2 pipeline_analyses
Description : Implements pipeline_analyses() interface method of Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf that defines the structure of the pipeline: analyses, jobs, rules, etc.
......@@ -136,6 +138,7 @@ sub pipeline_analyses {
{ -logic_name => 'part_multiply',
-module => 'Bio::EnsEMBL::Hive::RunnableDB::LongMult::PartMultiply',
-parameters => {},
-hive_capacity => 8,
-input_ids => [
# (jobs for this analysis will be flown_into via branch-2 from 'start' jobs above)
],
......
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