'pipeline_name'=>'long_mult',# name used by the beekeeper to prefix job names on the farm
'pipeline_db'=>{# connection parameters
-host=>'compara1',
-host=>'compara2',
-port=>3306,
-user=>'ensadmin',
-pass=>$self->o('password'),# a rule where a previously undefined parameter is used (which makes either of them obligatory)
-dbname=>$ENV{USER}.'_'.$self->o('pipeline_name'),# a rule where a previously defined parameter is used (which makes both of them optional)
},
'first_mult'=>'9650516169',# the actual numbers that will be multiplied must also be possible to specify from the command line
'first_mult'=>'9650156169',# the actual numbers that will be multiplied must also be possible to specify from the command line
'second_mult'=>'327358788',
};
}
=head2 pipeline_create_commands
Description : Implements pipeline_create_commands() interface method of Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf that lists the commands that will create and set up the Hive database.
...
...
@@ -102,6 +103,7 @@ sub pipeline_create_commands {
];
}
=head2 pipeline_analyses
Description : Implements pipeline_analyses() interface method of Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf that defines the structure of the pipeline: analyses, jobs, rules, etc.
