Commit c4e7aecf authored by Leo Gordon's avatar Leo Gordon
Browse files

new changelog incorporated into README

parent 300e8277
......@@ -17,6 +17,196 @@ Changelog:
---------------------[before EnsEMBL rel.68]----------------------------------------------------------------
2012-05-28 16:18 lg4
* README, modules/Bio/EnsEMBL/Hive/ResourceDescription.pm: schema
change to allow any short string for meadow_type
2012-05-28 14:10 lg4
* sql/: patch_2012-05-28.sql, tables.sql: schema change to allow
any short string for meadow_type
2012-05-23 15:27 lg4
* modules/Bio/EnsEMBL/Hive/Queen.pm: a Valley-wide (potentially
multi-meadow) garbage collector
2012-05-23 15:14 lg4
* scripts/beekeeper.pl: bugfix:
schedule_workers_resync_if_necessary should now be run with a
$valley argument
2012-05-23 12:07 lg4
* modules/Bio/EnsEMBL/Hive/Valley.pm, scripts/beekeeper.pl:
pipeline_name now gets propagated to all meadows of the Valley
(preparatory)
2012-05-23 11:12 lg4
* modules/Bio/EnsEMBL/Hive/: Valley.pm, Meadow/LOCAL.pm,
Meadow/LSF.pm: reuse the meadow->name() method to check for
availability [cleanup]
2012-05-23 11:11 lg4
* modules/Bio/EnsEMBL/Hive/Queen.pm, scripts/beekeeper.pl: pass in
a Valley instead of the current_meadow (preparatory)
2012-05-22 17:58 lg4
* modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm,
modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm, scripts/beekeeper.pl:
kill-worker-process-by-worker-id: simplified specific Meadow code
by moving general checks out of them
2012-05-22 17:54 lg4
* modules/Bio/EnsEMBL/Hive/Valley.pm: the Meadow hash is now by
type, so no need to iterate to find Meadow-by-Worker
2012-05-22 13:01 lg4
* modules/Bio/EnsEMBL/Hive/Queen.pm, scripts/beekeeper.pl:
untangling a bit. Queen does not need to re-sync and beekeeper
does not need to fetch
2012-05-22 11:50 lg4
* modules/Bio/EnsEMBL/Hive/Queen.pm, scripts/beekeeper.pl:
simplified output interface from schedule_workers and
schedule_workers_resync_if_necessary
2012-05-21 22:47 lg4
* modules/Bio/EnsEMBL/Hive/Meadow.pm,
modules/Bio/EnsEMBL/Hive/Valley.pm, scripts/beekeeper.pl: valley
now contains available meadow objects, not classes; beekeeper
contains corrected algorithm for killing a worker
2012-05-18 15:12 lg4
* modules/Bio/EnsEMBL/Hive/Meadow.pm,
modules/Bio/EnsEMBL/Hive/Queen.pm,
modules/Bio/EnsEMBL/Hive/Valley.pm,
modules/Bio/EnsEMBL/Hive/Worker.pm,
modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm,
modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm, scripts/runWorker.pl,
sql/patch_2012-05-18.sql, sql/tables.sql, sql/tables.sqlite:
added schema and API support for meadow_name
2012-05-18 14:00 lg4
* modules/Bio/EnsEMBL/Hive/Valley.pm: fixed a typo bug
2012-05-17 10:33 lg4
* scripts/beekeeper.pl: rename meadow_name to meadow_type to match
the rest of the repository, before it is too late
2012-05-12 08:47 lg4
* modules/Bio/EnsEMBL/Hive/Meadow.pm,
modules/Bio/EnsEMBL/Hive/Valley.pm, scripts/runWorker.pl: moved
meadow identification code to Valley.pm
2012-05-11 16:40 lg4
* scripts/beekeeper.pl: moved the "meadow-collection" code into a
separate class called "Valley"
2012-05-11 16:39 lg4
* modules/Bio/EnsEMBL/Hive/Valley.pm: a new class to represent a
collection of available Meadows
2012-05-10 16:27 lg4
* scripts/: beekeeper.pl, runWorker.pl: removed obsolete
-maximise_concurrency and -batch_size options from both scripts
2012-05-09 12:01 lg4
* modules/Bio/EnsEMBL/Hive/Meadow.pm,
modules/Bio/EnsEMBL/Hive/Queen.pm,
modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm, scripts/beekeeper.pl:
bugfix+feature: -local_cpus renamed into -total_workers_max and
so made available for any meadow (not just LOCAL). Plus some
renames
2012-05-08 17:50 lg4
* scripts/beekeeper.pl: make beekeeper more Meadow-agnostic and
allow it to automatically find alternative Meadow modules in the
INC list
2012-05-08 17:49 lg4
* modules/Bio/EnsEMBL/Hive/Meadow/: LOCAL.pm, LSF.pm: check the
availability of this Meadow on the given machine
2012-05-08 17:48 lg4
* modules/Bio/EnsEMBL/Hive/Utils.pm: new function for finding all
modules in a "directory" across the whole INC list
2012-05-02 15:59 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/: AnalysisCtrlRuleAdaptor.pm,
DataflowRuleAdaptor.pm: removed create_rule() method that is no
longer used
2012-05-02 15:54 lg4
* modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm: explicit
new->store rules; retiring create_rule(); switch to using
toString()
2012-05-02 15:53 lg4
* modules/Bio/EnsEMBL/Hive/: AnalysisCtrlRule.pm, DataflowRule.pm:
switch to using uniform toString() diagnostic method
2012-05-02 12:10 lg4
* modules/Bio/EnsEMBL/Hive/: DataflowRule.pm,
DBSQL/DataflowRuleAdaptor.pm: move input_id_template
stringification into DFR class
2012-05-01 17:04 lg4
* modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm:
remove_by_condition_analysis_url() is no longer used by Compara,
so has been removed
2012-05-01 16:37 lg4
* modules/Bio/EnsEMBL/Hive/: Process.pm, Worker.pm: a Process does
not need a reference to the Queen
2012-05-01 16:30 lg4
* modules/Bio/EnsEMBL/Hive/Extensions.pm: analyze_tables() does not
seem to be used anymore
2012-05-01 15:55 lg4
* modules/Bio/EnsEMBL/Hive/Worker.pm: bugfix: make sure
runtime_msec is stored even when a job dies
2012-05-01 10:58 lg4
* modules/Bio/EnsEMBL/Hive/: Extensions.pm, Process.pm: no longer
used
2012-04-23 23:04 lg4
* modules/Bio/EnsEMBL/Hive/Utils/Graph.pm,
modules/Bio/EnsEMBL/Hive/Utils/GraphViz.pm,
scripts/generate_graph.pl: code for showing semaphores as nested
boxes
---------------------[after EnsEMBL rel.67]----------------------------------------------------------------
......
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