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Commit c7895493 authored by Leo Gordon's avatar Leo Gordon
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extending the JSON config to shapes/colours/fonts of the new node types

parent 9683ed80
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Showing with 62 additions and 21 deletions
hive_config.json
View file @ c7895493
......@@ -42,7 +42,6 @@
"Node" : {
"Font" : "Times-Roman",
"Colour" : "cyan",
"Table" : { "Colour" : "black", "Font" : "Courier" },
"Details" : { "Font" : "Helvetica" },
"JobStatus" : {
......@@ -63,7 +62,30 @@
"WORKING" : { "Colour" : "yellow" },
"DONE" : { "Colour" : "DeepSkyBlue" },
"FAILED" : { "Colour" : "red" }
}
},
"Table" : {
"Colour" : "orange",
"HeaderColour" : "orangered",
"Font" : "Courier",
"FontColour" : "black"
},
"AccuSink" : {
"Shape" : "invhouse",
"Style" : "filled",
"Colour" : "darkgreen",
"Font" : "Courier",
"FontColour" : "white"
},
"Switch" : {
"Shape" : "diamond",
"Style" : "filled",
"Colour" : "blueviolet",
"Font" : "Courier",
"FontColour" : "white"
},
},
"Edge" : {
"Font" : "Helvetica",
......
modules/Bio/EnsEMBL/Hive/Utils/Graph.pm
View file @ c7895493
......@@ -214,8 +214,8 @@ sub build {
my $from = $self->_analysis_node_name( $analysis );
my $to = _midpoint_name( $analysis->{'_funnel_dfr'} );
$self->graph->add_edge( $from => $to,
color => 'black',
style => 'invis', # toggle visibility by changing 'invis' to 'dashed'
color => 'black',
);
}
}
......@@ -323,9 +323,9 @@ sub _add_pipeline_label {
my $pipelabel_node_name = 'pipelabel_'.$pipeline->hive_pipeline_name;
$self->graph()->add_node( $pipelabel_node_name,
label => $pipeline_label,
fontname => $node_fontname,
shape => 'plaintext',
fontname => $node_fontname,
label => $pipeline_label,
);
return $pipelabel_node_name;
......@@ -408,11 +408,11 @@ sub _add_analysis_node {
$analysis_label .= '</table>>';
$self->graph->add_node( $this_analysis_node_name,
label => $analysis_label,
shape => 'record',
fontname => $node_fontname,
style => $style,
fillcolor => $analysis_status_colour,
fontname => $node_fontname,
label => $analysis_label,
);
$self->_add_control_rules( $analysis->control_rules_collection );
......@@ -425,15 +425,21 @@ sub _add_analysis_node {
sub _add_accu_sink_node {
my ($self, $funnel_dfr) = @_;
my $accusink_shape = $self->config_get('Node', 'AccuSink', 'Shape');
my $accusink_style = $self->config_get('Node', 'AccuSink', 'Style');
my $accusink_colour = $self->config_get('Node', 'AccuSink', 'Colour');
my $accusink_font = $self->config_get('Node', 'AccuSink', 'Font');
my $accusink_fontcolour = $self->config_get('Node', 'AccuSink', 'FontColour');
my $accu_sink_node_name = _accu_sink_node_name( $funnel_dfr );
$self->graph->add_node( $accu_sink_node_name,
# shape => 'noverhang',
# shape => 'invtriangle',
shape => 'invhouse',
label => '',
style => 'filled',
fillcolor => 'darkgreen',
style => $accusink_style,
shape => $accusink_shape,
fillcolor => $accusink_colour,
fontname => $accusink_font,
fontcolor => $accusink_fontcolour,
label => 'Accu',
);
return $accu_sink_node_name;
......@@ -526,6 +532,11 @@ sub _twopart_arrow {
my $graph = $self->graph();
my $df_edge_fontname = $self->config_get('Edge', 'Data', 'Font');
my $switch_shape = $self->config_get('Node', 'Switch', 'Shape');
my $switch_style = $self->config_get('Node', 'Switch', 'Style');
my $switch_colour = $self->config_get('Node', 'Switch', 'Colour');
my $switch_font = $self->config_get('Node', 'Switch', 'Font');
my $switch_fontcolour = $self->config_get('Node', 'Switch', 'FontColour');
my $from_analysis = $df_rule->from_analysis;
my $from_node_name = $self->_analysis_node_name( $from_analysis );
......@@ -535,10 +546,13 @@ sub _twopart_arrow {
my $choice = (scalar(@$df_targets)!=1) || defined($df_targets->[0]->on_condition);
$graph->add_node( $midpoint_name, # midpoint itself
color => 'black',
$choice ? (
shape => 'diamond',
label => scalar(@$df_targets)==1 ? 'Filter' : 'Switch',
style => $switch_style,
shape => $switch_shape,
fillcolor => $switch_colour,
fontname => $switch_font,
fontcolor => $switch_fontcolour,
label => scalar(@$df_targets)==1 ? 'Filter' : 'Switch',
) : (
shape => 'point',
fixedsize => 1,
......@@ -616,7 +630,11 @@ sub _add_dataflow_rules {
sub _add_table_node {
my ($self, $naked_table) = @_;
my $node_fontname = $self->config_get('Node', 'Table', 'Font');
my $table_colour = $self->config_get('Node', 'Table', 'Colour');
my $table_header_colour = $self->config_get('Node', 'Table', 'HeaderColour');
my $table_fontcolour = $self->config_get('Node', 'Table', 'FontColour');
my $table_fontname = $self->config_get('Node', 'Table', 'Font');
my $hive_pipeline = $self->pipeline;
my $this_table_node_name = $self->_table_node_name( $naked_table );
......@@ -638,7 +656,7 @@ sub _add_table_node {
if( $self->config_get('DisplayData') and $columns) {
$table_label .= '<tr><td colspan="'.$columns.'"> </td></tr>';
$table_label .= '<tr>'.join('', map { qq{<td bgcolor="lightblue" border="1">$_</td>} } @column_names).'</tr>';
$table_label .= '<tr>'.join('', map { qq{<td bgcolor="$table_header_colour" border="1">$_</td>} } @column_names).'</tr>';
foreach my $row (@$table_data) {
$table_label .= '<tr>'.join('', map { qq{<td>$_</td>} } @{$row}{@column_names}).'</tr>';
}
......@@ -649,11 +667,12 @@ sub _add_table_node {
$table_label .= '</table>>';
$self->graph()->add_node( $this_table_node_name,
label => $table_label,
shape => 'record',
fontname => $node_fontname,
style => 'filled',
fillcolor => 'white',
fillcolor => $table_colour,
fontname => $table_fontname,
fontcolor => $table_fontcolour,
label => $table_label,
);
return $this_table_node_name;
......
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