diff --git a/docs/doxygen/AccumulatorAdaptor_8pm.html b/docs/doxygen/AccumulatorAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..e29fffce1b7f95a86022104db630c0412c6c68a2 --- /dev/null +++ b/docs/doxygen/AccumulatorAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AccumulatorAdaptor.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+
AccumulatorAdaptor.pm File Reference
+
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+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::AccumulatorAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/Accumulator_8pm.html b/docs/doxygen/Accumulator_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..143bfbbe32017cad4e2493338a26c8272cb7670c --- /dev/null +++ b/docs/doxygen/Accumulator_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Accumulator.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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+ +
+
Accumulator.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Accumulator
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/AddTogether_8pm.html b/docs/doxygen/AddTogether_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..3cb89082bfc9aea7f34999f5b60b8b410f4d2d4e --- /dev/null +++ b/docs/doxygen/AddTogether_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/RunnableDB/AddTogether.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
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+ +
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+ +
+
AddTogether.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB::AddTogether
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisAdaptor_8pm.html b/docs/doxygen/AnalysisAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..c544d736d1a9bbbf3b7c644c1c694d2bedbcbabe --- /dev/null +++ b/docs/doxygen/AnalysisAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisAdaptor.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
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+
AnalysisAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisCtrlRuleAdaptor_8pm.html b/docs/doxygen/AnalysisCtrlRuleAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..7f56a81292cc4af5198db1470529076b1606fa5c --- /dev/null +++ b/docs/doxygen/AnalysisCtrlRuleAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisCtrlRuleAdaptor.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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+
AnalysisCtrlRuleAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::AnalysisCtrlRuleAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisCtrlRule_8pm.html b/docs/doxygen/AnalysisCtrlRule_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b218d1bb78da54de85888497f42caaa0bcc2f12c --- /dev/null +++ b/docs/doxygen/AnalysisCtrlRule_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/AnalysisCtrlRule.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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+
AnalysisCtrlRule.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::AnalysisCtrlRule
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisDataAdaptor_8pm.html b/docs/doxygen/AnalysisDataAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b1382de9a9d5f48c79334bb0e579e8265deb0383 --- /dev/null +++ b/docs/doxygen/AnalysisDataAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisDataAdaptor.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+
AnalysisDataAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisJobAdaptor_8pm.html b/docs/doxygen/AnalysisJobAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..25152bd90509621b4552e8e4fa9d346958770c21 --- /dev/null +++ b/docs/doxygen/AnalysisJobAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisJobAdaptor.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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AnalysisJobAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisJob_8pm.html b/docs/doxygen/AnalysisJob_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..216b7803c335dc82f715b6177d99054992955780 --- /dev/null +++ b/docs/doxygen/AnalysisJob_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/AnalysisJob.pm File Reference + + + + + + + + + + + + + + +
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AnalysisJob.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::AnalysisJob
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisStatsAdaptor_8pm.html b/docs/doxygen/AnalysisStatsAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..a4e0dfa4b7f8f7a5ed62d664d3baa3a4a91afcec --- /dev/null +++ b/docs/doxygen/AnalysisStatsAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AnalysisStatsAdaptor.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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+
AnalysisStatsAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/AnalysisStats_8pm.html b/docs/doxygen/AnalysisStats_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..cdf35132c8e126c2caaff7da4eae61a022fc50a9 --- /dev/null +++ b/docs/doxygen/AnalysisStats_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/AnalysisStats.pm File Reference + + + + + + + + + + + + + + +
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+
AnalysisStats.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::AnalysisStats
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Analysis_8pm.html b/docs/doxygen/Analysis_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..cfb6d210caf4f1ba4a121c1bdac2427148121c4c --- /dev/null +++ b/docs/doxygen/Analysis_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Analysis.pm File Reference + + + + + + + + + + + + + + +
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+ +
+
Analysis.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Analysis
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/AnyCommands__conf_8pm.html b/docs/doxygen/AnyCommands__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..d774aa488e33f7632b76837293128b1b141f4cc8 --- /dev/null +++ b/docs/doxygen/AnyCommands__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/SystemCmd/PipeConfig/AnyCommands_conf.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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+
AnyCommands_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::SystemCmd::PipeConfig::AnyCommands_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::SystemCmd
 
 Bio::EnsEMBL::Hive::Examples::SystemCmd::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/ApplyToDatabases__conf_8pm.html b/docs/doxygen/ApplyToDatabases__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..96f20ebcabd17de3d8d672452b1693909a679971 --- /dev/null +++ b/docs/doxygen/ApplyToDatabases__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/Factories/PipeConfig/ApplyToDatabases_conf.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
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+ +
+ +
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+ + +
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+ +
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+
ApplyToDatabases_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig::ApplyToDatabases_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::Factories
 
 Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/BaseAdaptor_8pm.html b/docs/doxygen/BaseAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b225f36cb6a3c330465c9d04642529f8273034d9 --- /dev/null +++ b/docs/doxygen/BaseAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/BaseAdaptor.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+
BaseAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/Cacheable_8pm.html b/docs/doxygen/Cacheable_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..811b4091fc4bd6b54a30d67bc67ce49a0a0f588a --- /dev/null +++ b/docs/doxygen/Cacheable_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Cacheable.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+ +
+
Cacheable.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Cacheable
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/CalcOverallPercentage_8pm.html b/docs/doxygen/CalcOverallPercentage_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..3dbd47642c925e786cbc2fe476ec5f88e1bc1904 --- /dev/null +++ b/docs/doxygen/CalcOverallPercentage_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/GC/RunnableDB/CalcOverallPercentage.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+
CalcOverallPercentage.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::GC::RunnableDB::CalcOverallPercentage
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::GC
 
 Bio::EnsEMBL::Hive::Examples::GC::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/Collection_8pm.html b/docs/doxygen/Collection_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..4702095d1764321b846a14cfb385f4fca14277bd --- /dev/null +++ b/docs/doxygen/Collection_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/Collection.pm File Reference + + + + + + + + + + + + + + +
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+ +
+
Collection.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::Collection
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/CompressFiles__conf_8pm.html b/docs/doxygen/CompressFiles__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..c48ed59950bcbcbb9202db21d47227e9ced94ff9 --- /dev/null +++ b/docs/doxygen/CompressFiles__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/Factories/PipeConfig/CompressFiles_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
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+
CompressFiles_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig::CompressFiles_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::Factories
 
 Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/Config_8pm.html b/docs/doxygen/Config_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..cbf01382a86447ffc7d95ea88ba90caafd048f12 --- /dev/null +++ b/docs/doxygen/Config_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/Config.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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+ +
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+ +
+ +
+ +
+
Config.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::Config
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/Configurable_8pm.html b/docs/doxygen/Configurable_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..55feea8a2f04e524fbf4b421f4122a1fcab2ff79 --- /dev/null +++ b/docs/doxygen/Configurable_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Configurable.pm File Reference + + + + + + + + + + + + + + +
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+ +
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+ +
+ +
+ +
+
Configurable.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Configurable
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/CoreDBConnection_8pm.html b/docs/doxygen/CoreDBConnection_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..a1dcb5d980ba918176dedb97154bbe05b6b3971a --- /dev/null +++ b/docs/doxygen/CoreDBConnection_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/CoreDBConnection.pm File Reference + + + + + + + + + + + + + + +
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+ +
+ +
+ +
+
CoreDBConnection.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
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+
ensembl-hive +  2.4 +
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+
+ +
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+
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+
CountATGC.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::GC::RunnableDB::CountATGC
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::GC
 
 Bio::EnsEMBL::Hive::Examples::GC::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/DBAdaptor_8pm.html b/docs/doxygen/DBAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..f8b040f61df7a35920287e738f60a48d1b83ba94 --- /dev/null +++ b/docs/doxygen/DBAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/DBAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+ + + + + + + +
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+ +
+ +
+
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+ +
+ +
+ +
+
DBAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::DBAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/DBConnection_8pm.html b/docs/doxygen/DBConnection_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..a66da87edf0e0ce1ab820ee9f73fe84da8b236aa --- /dev/null +++ b/docs/doxygen/DBConnection_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/DBConnection.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+
+
+ +
+ +
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+ +
+ +
+ +
+
DBConnection.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::DBConnection
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/DatabaseDumper_8pm.html b/docs/doxygen/DatabaseDumper_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..55a851320d438f3b1dc287ac5870f3ebb26e17a3 --- /dev/null +++ b/docs/doxygen/DatabaseDumper_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/DatabaseDumper.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
+ +
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+ +
+ +
+ +
+
DatabaseDumper.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::DatabaseDumper
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/DataflowRuleAdaptor_8pm.html b/docs/doxygen/DataflowRuleAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..268e1c3f89ccac049361e4d5df8e0d0d548d2d94 --- /dev/null +++ b/docs/doxygen/DataflowRuleAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/DataflowRuleAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+ + + + + + + +
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+ +
+ +
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+ +
+ +
+
DataflowRuleAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::DataflowRuleAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/DataflowRule_8pm.html b/docs/doxygen/DataflowRule_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..318dac5d2d535378ba73c8f0d093d8e53f62a5c2 --- /dev/null +++ b/docs/doxygen/DataflowRule_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DataflowRule.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
+
DataflowRule.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DataflowRule
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/DataflowTargetAdaptor_8pm.html b/docs/doxygen/DataflowTargetAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..dc98b872539d55018f352c00b45dc73c96057ce9 --- /dev/null +++ b/docs/doxygen/DataflowTargetAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/DataflowTargetAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
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+ +
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+
DataflowTargetAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::DataflowTargetAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/DataflowTarget_8pm.html b/docs/doxygen/DataflowTarget_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..718ba03a06066107384da49666e65ba9b39666a7 --- /dev/null +++ b/docs/doxygen/DataflowTarget_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DataflowTarget.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
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+
DataflowTarget.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DataflowTarget
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/DbCmd_8pm.html b/docs/doxygen/DbCmd_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b99d6d383efb1a00cd978c22f4d7447b086c9184 --- /dev/null +++ b/docs/doxygen/DbCmd_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/DbCmd.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
+
ensembl-hive +  2.4 +
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+ +
+ +
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+ +
+ +
+ +
+
DbCmd.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::DbCmd
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/DependentOptions_8pm.html b/docs/doxygen/DependentOptions_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..29f1611865f5d48849b403ed09976395ae1d54e9 --- /dev/null +++ b/docs/doxygen/DependentOptions_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DependentOptions.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+ +
+ +
+
+ + +
+ +
+ +
+ +
+
DependentOptions.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DependentOptions
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/DigitFactory_8pm.html b/docs/doxygen/DigitFactory_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..ddbcd5f5776f953b5175b9a984713e49411b0ed6 --- /dev/null +++ b/docs/doxygen/DigitFactory_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/RunnableDB/DigitFactory.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
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+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
DigitFactory.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB::DigitFactory
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/Dummy_8pm.html b/docs/doxygen/Dummy_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..fb88db17e2b281e88c4b2994a7e715b43d7d6832 --- /dev/null +++ b/docs/doxygen/Dummy_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/Dummy.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
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+ +
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+ +
+ +
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+ + +
+ +
+ +
+ +
+
Dummy.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::Dummy
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/EnsemblGeneric__conf_8pm.html b/docs/doxygen/EnsemblGeneric__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..0d616aa1b09939e3ecbe27bfd69fd630d06ba6af --- /dev/null +++ b/docs/doxygen/EnsemblGeneric__conf_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/PipeConfig/EnsemblGeneric_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
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+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
EnsemblGeneric_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::PipeConfig::EnsemblGeneric_conf
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/FailureTest_8pm.html b/docs/doxygen/FailureTest_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..6a523c5cc95da3fe2b0185ee0579d9284ef2a790 --- /dev/null +++ b/docs/doxygen/FailureTest_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/FailureTest/RunnableDB/FailureTest.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
FailureTest.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::FailureTest::RunnableDB::FailureTest
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::FailureTest
 
 Bio::EnsEMBL::Hive::Examples::FailureTest::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/FailureTest__conf_8pm.html b/docs/doxygen/FailureTest__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..c17c5107e15ff3bcf3f311f2d6af830203f4bc50 --- /dev/null +++ b/docs/doxygen/FailureTest__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/FailureTest/PipeConfig/FailureTest_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
FailureTest_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::FailureTest::PipeConfig::FailureTest_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::FailureTest
 
 Bio::EnsEMBL::Hive::Examples::FailureTest::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/FastaFactory_8pm.html b/docs/doxygen/FastaFactory_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b0335d1a76486e9f5e8fcac37adffb04745ca1a0 --- /dev/null +++ b/docs/doxygen/FastaFactory_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/FastaFactory.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
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+
+
+ + + + + + + +
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+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
FastaFactory.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::FastaFactory
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/FastaSplitter__conf_8pm.html b/docs/doxygen/FastaSplitter__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..07a32a2fef3f1e1d60c8c13db061ab6e664fea91 --- /dev/null +++ b/docs/doxygen/FastaSplitter__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/Factories/PipeConfig/FastaSplitter_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
FastaSplitter_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig::FastaSplitter_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::Factories
 
 Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/GCPct__conf_8pm.html b/docs/doxygen/GCPct__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..929102bdf325ea5d57792e147068e9d3cd6dbe94 --- /dev/null +++ b/docs/doxygen/GCPct__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/GC/PipeConfig/GCPct_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
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+ +
+ +
+
+ + +
+ +
+ +
+ +
+
GCPct_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::GC::PipeConfig::GCPct_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::GC
 
 Bio::EnsEMBL::Hive::Examples::GC::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/GraphViz_8pm.html b/docs/doxygen/GraphViz_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..fe36e546998428fa9ca889d103ac1aa13c54a229 --- /dev/null +++ b/docs/doxygen/GraphViz_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/GraphViz.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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+ +
+ +
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+ +
+ +
+ +
+
GraphViz.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::GraphViz
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/Graph_8pm.html b/docs/doxygen/Graph_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..601c1e805c90a4ab216d3a00f963afcd1af0d3eb --- /dev/null +++ b/docs/doxygen/Graph_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/Graph.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
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+ +
+ +
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+ + +
+ +
+ +
+ +
+
Graph.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::Graph
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/GuestProcess_8pm.html b/docs/doxygen/GuestProcess_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..457b7eebbef97eda90794eb45877c17fbe1c2dd3 --- /dev/null +++ b/docs/doxygen/GuestProcess_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/GuestProcess.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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+ +
+ +
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+ +
+ +
+ +
+
GuestProcess.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::GuestProcess
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/HiveGeneric__conf_8pm.html b/docs/doxygen/HiveGeneric__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..677f7646d900b81e577ccc4875d438b74722bd3b --- /dev/null +++ b/docs/doxygen/HiveGeneric__conf_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/PipeConfig/HiveGeneric_conf.pm File Reference + + + + + + + + + + + + + + +
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+
HiveGeneric_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/HivePipeline_8pm.html b/docs/doxygen/HivePipeline_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..29957c0aa764f2df399bc0b8c34ba6a7bbfe44ae --- /dev/null +++ b/docs/doxygen/HivePipeline_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/HivePipeline.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
HivePipeline.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::HivePipeline
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Hive_8pm.html b/docs/doxygen/Hive_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..17a6dc0e682e5e9b3ddafaff04ad0e3d890bb83d --- /dev/null +++ b/docs/doxygen/Hive_8pm.html @@ -0,0 +1,115 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Hive.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive
 
+ + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
+
+
+ + + + diff --git a/docs/doxygen/InitPipeline_8pm.html b/docs/doxygen/InitPipeline_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..690983bd54e5ea4015da770e56deb40ee218d5b8 --- /dev/null +++ b/docs/doxygen/InitPipeline_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Scripts/InitPipeline.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
InitPipeline.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Scripts::InitPipeline
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Scripts
 
+
+
+ + + + diff --git a/docs/doxygen/JobFactory_8pm.html b/docs/doxygen/JobFactory_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..693d2b53d5c7461c3155fdbc32abb7b11edbc45f --- /dev/null +++ b/docs/doxygen/JobFactory_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/JobFactory.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
JobFactory.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::JobFactory
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/LOCAL_8pm.html b/docs/doxygen/LOCAL_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..fc5f4ee152589dfe2c46b1f367f92b7ddfe907e7 --- /dev/null +++ b/docs/doxygen/LOCAL_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Meadow/LOCAL.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LOCAL.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Meadow::LOCAL
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Meadow
 
+
+
+ + + + diff --git a/docs/doxygen/LSF_8pm.html b/docs/doxygen/LSF_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..544b7413a56ab645508c38da127d62ae466c2da6 --- /dev/null +++ b/docs/doxygen/LSF_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Meadow/LSF.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LSF.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Meadow::LSF
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Meadow
 
+
+
+ + + + diff --git a/docs/doxygen/Limiter_8pm.html b/docs/doxygen/Limiter_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..082f7c5157b030fc279058d2bb9adf71fcfb9d4d --- /dev/null +++ b/docs/doxygen/Limiter_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Limiter.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Limiter.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Limiter
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/LogMessageAdaptor_8pm.html b/docs/doxygen/LogMessageAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..75d043f2aec539161c6f27af1d3f9ccddef67dab --- /dev/null +++ b/docs/doxygen/LogMessageAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/LogMessageAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LogMessageAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::LogMessageAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/LongMultClient__conf_8pm.html b/docs/doxygen/LongMultClient__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..e24c9fc638189354698b10ffd54e4e437441472d --- /dev/null +++ b/docs/doxygen/LongMultClient__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultClient_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LongMultClient_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMultClient_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/LongMultServer__conf_8pm.html b/docs/doxygen/LongMultServer__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..14f3da18fa9f40e8a85c41096574b07e91f2c1ee --- /dev/null +++ b/docs/doxygen/LongMultServer__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultServer_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LongMultServer_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMultServer_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/LongMultSt__conf_8pm.html b/docs/doxygen/LongMultSt__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..ee0f34a7610a48f137e750617cc587d8f13fa2ca --- /dev/null +++ b/docs/doxygen/LongMultSt__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultSt_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LongMultSt_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMultSt_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/LongMultSt__pyconf_8pm.html b/docs/doxygen/LongMultSt__pyconf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..07c47f5328076022ee142899c9184bc8e3193408 --- /dev/null +++ b/docs/doxygen/LongMultSt__pyconf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultSt_pyconf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LongMultSt_pyconf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMultSt_pyconf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/LongMultWf__conf_8pm.html b/docs/doxygen/LongMultWf__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..5606f15e204c13116c5b9858032f4ed5e7aac0f9 --- /dev/null +++ b/docs/doxygen/LongMultWf__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultWf_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LongMultWf_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMultWf_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/LongMult__conf_8pm.html b/docs/doxygen/LongMult__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..5ab76818ea7a889b1538d151df4c97be92c00223 --- /dev/null +++ b/docs/doxygen/LongMult__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMult_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
LongMult_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMult_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/Meadow_8pm.html b/docs/doxygen/Meadow_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..2664aa8f542637d80fba0cdc280866acce5e25c7 --- /dev/null +++ b/docs/doxygen/Meadow_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Meadow.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Meadow.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Meadow
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/MemlimitTest__conf_8pm.html b/docs/doxygen/MemlimitTest__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..054c41c04c1c548d1cc92318b9fcebcb7ee423e3 --- /dev/null +++ b/docs/doxygen/MemlimitTest__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/FailureTest/PipeConfig/MemlimitTest_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MemlimitTest_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::FailureTest::PipeConfig::MemlimitTest_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::FailureTest
 
 Bio::EnsEMBL::Hive::Examples::FailureTest::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/MetaAdaptor_8pm.html b/docs/doxygen/MetaAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..7559c0bb167052b3bc948f1625e92dbb6b1896ea --- /dev/null +++ b/docs/doxygen/MetaAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/MetaAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MetaAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::MetaAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/MetaParameters_8pm.html b/docs/doxygen/MetaParameters_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..57553c640efb7c15a6a17e013513c99ec9a76370 --- /dev/null +++ b/docs/doxygen/MetaParameters_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/MetaParameters.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MetaParameters.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::MetaParameters
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/MiniPecanMulti__conf_8pm.html b/docs/doxygen/MiniPecanMulti__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..bb07d39b364be8a70365a297cc6b149eb23b94bc --- /dev/null +++ b/docs/doxygen/MiniPecanMulti__conf_8pm.html @@ -0,0 +1,107 @@ + + + + + + + +ensembl-hive: docs/presentations/HiveWorkshop_22Feb2013/MiniPecanMulti_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MiniPecanMulti_conf.pm File Reference
+
+
+ + + + +

+Classes

class  MiniPecanMulti_conf
 
+
+
+ + + + diff --git a/docs/doxygen/MiniPecanSingle2__conf_8pm.html b/docs/doxygen/MiniPecanSingle2__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..cb9ddfeb97711fe5fd571737ff9ac3d87c380ad4 --- /dev/null +++ b/docs/doxygen/MiniPecanSingle2__conf_8pm.html @@ -0,0 +1,107 @@ + + + + + + + +ensembl-hive: docs/presentations/HiveWorkshop_22Feb2013/MiniPecanSingle2_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MiniPecanSingle2_conf.pm File Reference
+
+
+ + + + +

+Classes

class  MiniPecanSingle2_conf
 
+
+
+ + + + diff --git a/docs/doxygen/MiniPecanSingle3__conf_8pm.html b/docs/doxygen/MiniPecanSingle3__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b3b6c7ed45f9eab21811375bb03a01d78900d961 --- /dev/null +++ b/docs/doxygen/MiniPecanSingle3__conf_8pm.html @@ -0,0 +1,107 @@ + + + + + + + +ensembl-hive: docs/presentations/HiveWorkshop_22Feb2013/MiniPecanSingle3_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MiniPecanSingle3_conf.pm File Reference
+
+
+ + + + +

+Classes

class  MiniPecanSingle3_conf
 
+
+
+ + + + diff --git a/docs/doxygen/MiniPecanSingle__conf_8pm.html b/docs/doxygen/MiniPecanSingle__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..a46f86d0bbec0b842e1afb92a0668228be7bbded --- /dev/null +++ b/docs/doxygen/MiniPecanSingle__conf_8pm.html @@ -0,0 +1,107 @@ + + + + + + + +ensembl-hive: docs/presentations/HiveWorkshop_22Feb2013/MiniPecanSingle_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MiniPecanSingle_conf.pm File Reference
+
+
+ + + + +

+Classes

class  MiniPecanSingle_conf
 
+
+
+ + + + diff --git a/docs/doxygen/MySQLTransfer_8pm.html b/docs/doxygen/MySQLTransfer_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..0254dc060944899fc404136a0e3febd4933273ba --- /dev/null +++ b/docs/doxygen/MySQLTransfer_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/MySQLTransfer.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
MySQLTransfer.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::MySQLTransfer
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/NakedTableAdaptor_8pm.html b/docs/doxygen/NakedTableAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..c76c4ac74460b6a412bd9c618d5091a26012c277 --- /dev/null +++ b/docs/doxygen/NakedTableAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/NakedTableAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
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+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
NakedTableAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/NakedTable_8pm.html b/docs/doxygen/NakedTable_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..0a377016b202cc2a792095d398d7663785dcf616 --- /dev/null +++ b/docs/doxygen/NakedTable_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/NakedTable.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
NakedTable.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::NakedTable
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/NotifyByEmail_8pm.html b/docs/doxygen/NotifyByEmail_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..2fbe8e8a042c60cec57c4647566357dbb6fe5aad --- /dev/null +++ b/docs/doxygen/NotifyByEmail_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/NotifyByEmail.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
NotifyByEmail.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::NotifyByEmail
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/ObjectAdaptor_8pm.html b/docs/doxygen/ObjectAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..d8ca409f0b27e5041e39205eed0724d26c19fa8d --- /dev/null +++ b/docs/doxygen/ObjectAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/ObjectAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
ObjectAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/PCL_8pm.html b/docs/doxygen/PCL_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..8678e8075f8c69212d29a9b52c82b99dc82838a5 --- /dev/null +++ b/docs/doxygen/PCL_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/PCL.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
PCL.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::PCL
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/Params_8pm.html b/docs/doxygen/Params_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..8b39c1595517c8b64e6a64868b976e8607163092 --- /dev/null +++ b/docs/doxygen/Params_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Params.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ + + + + + + +
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+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Params.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Params
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/PartMultiply_8pm.html b/docs/doxygen/PartMultiply_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..d73a0dbbeb343a7568c95d2a44ffb08b228345db --- /dev/null +++ b/docs/doxygen/PartMultiply_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/RunnableDB/PartMultiply.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
PartMultiply.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB::PartMultiply
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/PipelineWideParametersAdaptor_8pm.html b/docs/doxygen/PipelineWideParametersAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..50c6f0e804021fabf009e6c09412df74afedac1e --- /dev/null +++ b/docs/doxygen/PipelineWideParametersAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/PipelineWideParametersAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
PipelineWideParametersAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::PipelineWideParametersAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/PipelineWideParameters_8pm.html b/docs/doxygen/PipelineWideParameters_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..ba806013820948107f4459457999318955d9bee9 --- /dev/null +++ b/docs/doxygen/PipelineWideParameters_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/PipelineWideParameters.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
PipelineWideParameters.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::PipelineWideParameters
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Process_8pm.html b/docs/doxygen/Process_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..e3e0ef8cc5956ab471d1b2d19fef5d0281c059d7 --- /dev/null +++ b/docs/doxygen/Process_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Process.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Process.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Process
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Queen_8pm.html b/docs/doxygen/Queen_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..fdaaae7b25a0bda4fed1a8c732a47bd541f892ad --- /dev/null +++ b/docs/doxygen/Queen_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Queen.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Queen.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Queen
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/README_8md.html b/docs/doxygen/README_8md.html new file mode 100644 index 0000000000000000000000000000000000000000..0ef49802ddf2c8f872be347261b322ebcb186893 --- /dev/null +++ b/docs/doxygen/README_8md.html @@ -0,0 +1,99 @@ + + + + + + + +ensembl-hive: README.md File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+
+
README.md File Reference
+
+
+
+
+ + + + diff --git a/docs/doxygen/RedirectStack_8pm.html b/docs/doxygen/RedirectStack_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..79cce52572a1121a2e37fab00dfb8d8e5002d204 --- /dev/null +++ b/docs/doxygen/RedirectStack_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/RedirectStack.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
RedirectStack.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::RedirectStack
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/ResourceClassAdaptor_8pm.html b/docs/doxygen/ResourceClassAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..b7950f9d0ef6b4133e4f618e581c9ecc88f20586 --- /dev/null +++ b/docs/doxygen/ResourceClassAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/ResourceClassAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
ResourceClassAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::ResourceClassAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/ResourceClass_8pm.html b/docs/doxygen/ResourceClass_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..21ae9d9546393b40e08dfea87b48df819ed432d8 --- /dev/null +++ b/docs/doxygen/ResourceClass_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/ResourceClass.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
ResourceClass.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::ResourceClass
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/ResourceDescriptionAdaptor_8pm.html b/docs/doxygen/ResourceDescriptionAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..5196a434c1e5427cdbd93582a55d51cdf15b5e1b --- /dev/null +++ b/docs/doxygen/ResourceDescriptionAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/ResourceDescriptionAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
ResourceDescriptionAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::ResourceDescriptionAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/ResourceDescription_8pm.html b/docs/doxygen/ResourceDescription_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..2b83d4ba96f0e310a68eb40950eef44888466f13 --- /dev/null +++ b/docs/doxygen/ResourceDescription_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/ResourceDescription.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
ResourceDescription.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::ResourceDescription
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/RoleAdaptor_8pm.html b/docs/doxygen/RoleAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..8f58ecaa0a57f0c75eaac90b54480cd64bd3c431 --- /dev/null +++ b/docs/doxygen/RoleAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/RoleAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
RoleAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::RoleAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/Role_8pm.html b/docs/doxygen/Role_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..ce1fcb803b01058ee8db29e5220675e5da181b96 --- /dev/null +++ b/docs/doxygen/Role_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Role.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Role.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Role
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/RunListOfCommandsOnFarm__conf_8pm.html b/docs/doxygen/RunListOfCommandsOnFarm__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..2c8c9514bec3ab543bf8a482c549c69c618dd926 --- /dev/null +++ b/docs/doxygen/RunListOfCommandsOnFarm__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/Factories/PipeConfig/RunListOfCommandsOnFarm_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
RunListOfCommandsOnFarm_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig::RunListOfCommandsOnFarm_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::Factories
 
 Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/RunWorker_8pm.html b/docs/doxygen/RunWorker_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..657f96039155e72a147baf7e8a012d418579dae9 --- /dev/null +++ b/docs/doxygen/RunWorker_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Scripts/RunWorker.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
RunWorker.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Scripts::RunWorker
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Scripts
 
+
+
+ + + + diff --git a/docs/doxygen/Scheduler_8pm.html b/docs/doxygen/Scheduler_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..586702c8d2a19d85608c01ce971fb6fc80859c95 --- /dev/null +++ b/docs/doxygen/Scheduler_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Scheduler.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Scheduler.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Scheduler
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
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+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+
SlackNotification.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::SlackNotification
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/Slack_8pm.html b/docs/doxygen/Slack_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..e4e2cdbec95a29cb99dbd41db1cc235dc44f5b4d --- /dev/null +++ b/docs/doxygen/Slack_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/Slack.pm File Reference + + + + + + + + + + + + + + +
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ensembl-hive +  2.4 +
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+
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+ +
+ +
+
Slack.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::Slack
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/SmartLongMult__conf_8pm.html b/docs/doxygen/SmartLongMult__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..3f3fa07415d3dc99c451bea663db4be4a192c083 --- /dev/null +++ b/docs/doxygen/SmartLongMult__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/SmartLongMult_conf.pm File Reference + + + + + + + + + + + + + + +
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+ + + + + + +
+
ensembl-hive +  2.4 +
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+
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+ +
+ +
+
+ + +
+ +
+ +
+ +
+
SmartLongMult_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::SmartLongMult_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::LongMult
 
 Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig
 
+
+
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+
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ensembl-hive +  2.4 +
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+ +
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+ +
+
SqlCmd.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::SqlCmd
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/SqlHealthcheck_8pm.html b/docs/doxygen/SqlHealthcheck_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..89f8817a0d28dec49a797fb0ca1f35bf3197ae67 --- /dev/null +++ b/docs/doxygen/SqlHealthcheck_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/SqlHealthcheck.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
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+ +
+
SqlHealthcheck.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::SqlHealthcheck
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/SqlSchemaAdaptor_8pm.html b/docs/doxygen/SqlSchemaAdaptor_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..289df886f72bae4dbd5728fcc9b21d1356914944 --- /dev/null +++ b/docs/doxygen/SqlSchemaAdaptor_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/SqlSchemaAdaptor.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
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+ +
+ +
+
SqlSchemaAdaptor.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::SqlSchemaAdaptor
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/StandaloneJob_8pm.html b/docs/doxygen/StandaloneJob_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..6e6ea75fa877f380f4045a14186a229cc8c5ad91 --- /dev/null +++ b/docs/doxygen/StandaloneJob_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Scripts/StandaloneJob.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+ +
+ +
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+ +
+ +
+ +
+
StandaloneJob.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Scripts::StandaloneJob
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Scripts
 
+
+
+ + + + diff --git a/docs/doxygen/StatementHandle_8pm.html b/docs/doxygen/StatementHandle_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..00f3ac7dd8a573427f7023935dd7312cbfc7bd69 --- /dev/null +++ b/docs/doxygen/StatementHandle_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
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ensembl-hive +  2.4 +
+
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+
+ +
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+ +
+ +
+ +
+
StatementHandle.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::DBSQL::StatementHandle
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
+
+
+ + + + diff --git a/docs/doxygen/Stopwatch_8pm.html b/docs/doxygen/Stopwatch_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..6c7ba2517d338217c4f2aeb100d6800e0a862622 --- /dev/null +++ b/docs/doxygen/Stopwatch_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/Stopwatch.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+
+ +
+ +
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+ +
+ +
+ +
+
Stopwatch.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::Stopwatch
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/Storable_8pm.html b/docs/doxygen/Storable_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..1fceaa2cf894a52ecf9a134f5cc46585d34ab445 --- /dev/null +++ b/docs/doxygen/Storable_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Storable.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
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+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Storable.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Storable
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/SystemCmd_8pm.html b/docs/doxygen/SystemCmd_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..6260844022fd7f91a98ede3d78620c7767d99bfb --- /dev/null +++ b/docs/doxygen/SystemCmd_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/RunnableDB/SystemCmd.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
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+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
SystemCmd.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::RunnableDB::SystemCmd
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::RunnableDB
 
+
+
+ + + + diff --git a/docs/doxygen/TableDumperZipper__conf_8pm.html b/docs/doxygen/TableDumperZipper__conf_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..16e4e678736c14dcd4d9b6738d195918b843d051 --- /dev/null +++ b/docs/doxygen/TableDumperZipper__conf_8pm.html @@ -0,0 +1,123 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/DbCmd/PipeConfig/TableDumperZipper_conf.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
TableDumperZipper_conf.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Examples::DbCmd::PipeConfig::TableDumperZipper_conf
 
+ + + + + + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Examples
 
 Bio::EnsEMBL::Hive::Examples::DbCmd
 
 Bio::EnsEMBL::Hive::Examples::DbCmd::PipeConfig
 
+
+
+ + + + diff --git a/docs/doxygen/Test_8pm.html b/docs/doxygen/Test_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..4795a87fcfb4468ee15fd9a218f8888167cbd1d4 --- /dev/null +++ b/docs/doxygen/Test_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/Test.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Test.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::Test
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/TheApiary_8pm.html b/docs/doxygen/TheApiary_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..aa0fc7417ae12049d538b8ab4c77c94ad1e68629 --- /dev/null +++ b/docs/doxygen/TheApiary_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/TheApiary.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
TheApiary.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::TheApiary
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/URLFactory_8pm.html b/docs/doxygen/URLFactory_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..ec93d0b9feb12cb6ac219346c7f8b48a72dcbb8d --- /dev/null +++ b/docs/doxygen/URLFactory_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/URLFactory.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
URLFactory.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::URLFactory
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/URL_8pm.html b/docs/doxygen/URL_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..e1b794c6422fa17aca815596a25675305936f25b --- /dev/null +++ b/docs/doxygen/URL_8pm.html @@ -0,0 +1,119 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils/URL.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
URL.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils::URL
 
+ + + + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::Utils
 
+
+
+ + + + diff --git a/docs/doxygen/Utils_8pm.html b/docs/doxygen/Utils_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..e9a02b2142648d214774f4cd43d41356b4e47726 --- /dev/null +++ b/docs/doxygen/Utils_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Utils.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Utils.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Utils
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Valley_8pm.html b/docs/doxygen/Valley_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..36098faddaf7c521da9a739ab71e75cb7052ce81 --- /dev/null +++ b/docs/doxygen/Valley_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Valley.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Valley.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Valley
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Version_8pm.html b/docs/doxygen/Version_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..edea2e6d4103195185c0aedc2233f84c04f8fd70 --- /dev/null +++ b/docs/doxygen/Version_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Version.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Version.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Version
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/Worker_8pm.html b/docs/doxygen/Worker_8pm.html new file mode 100644 index 0000000000000000000000000000000000000000..a1ad6e1c83cb85705686894e414e9305e91b5893 --- /dev/null +++ b/docs/doxygen/Worker_8pm.html @@ -0,0 +1,117 @@ + + + + + + + +ensembl-hive: modules/Bio/EnsEMBL/Hive/Worker.pm File Reference + + + + + + + + + + + + + + +
+
+ + + + + + +
+
ensembl-hive +  2.4 +
+
+
+ + + + + + + +
+
+ +
+
+
+ +
+ +
+
+ + +
+ +
+ +
+ +
+
Worker.pm File Reference
+
+
+ + + + +

+Classes

class  Bio::EnsEMBL::Hive::Worker
 
+ + + + + + + +

+Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
+
+
+ + + + diff --git a/docs/doxygen/_accumulator_8pm.html b/docs/doxygen/_accumulator_8pm.html deleted file mode 100644 index 86443f9eb6e4cd95ea937b31797b1aebe88a1c03..0000000000000000000000000000000000000000 --- a/docs/doxygen/_accumulator_8pm.html +++ /dev/null @@ -1,139 +0,0 @@ - - - - - - -ensembl-hive: modules/Bio/EnsEMBL/Hive/Accumulator.pm File Reference - - - - - - - - - - - - - -
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ensembl-hive -  2.4 -
-
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-
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- All Classes Namespaces Files Functions
- - -
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Accumulator.pm File Reference
-
-
- - - - -

-Classes

class  Bio::EnsEMBL::Hive::Accumulator
 
- - - - - - - -

-Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
-
-
- - - - diff --git a/docs/doxygen/_accumulator_adaptor_8pm.html b/docs/doxygen/_accumulator_adaptor_8pm.html deleted file mode 100644 index 062486d67dbb4acb0ba0ad5235197c8d2b14e937..0000000000000000000000000000000000000000 --- a/docs/doxygen/_accumulator_adaptor_8pm.html +++ /dev/null @@ -1,141 +0,0 @@ - - - - - - -ensembl-hive: modules/Bio/EnsEMBL/Hive/DBSQL/AccumulatorAdaptor.pm File Reference - - - - - - - - - - - - - -
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ensembl-hive -  2.4 -
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- All Classes Namespaces Files Functions
- - -
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AccumulatorAdaptor.pm File Reference
-
-
- - - - -

-Classes

class  Bio::EnsEMBL::Hive::DBSQL::AccumulatorAdaptor
 
- - - - - - - - - -

-Namespaces

 Bio
 
 Bio::EnsEMBL
 
 Bio::EnsEMBL::Hive
 
 Bio::EnsEMBL::Hive::DBSQL
 
-
-
- - - - diff --git a/docs/doxygen/_add_together_8pm.html b/docs/doxygen/_add_together_8pm.html deleted file mode 100644 index 3e98624518cc0908aa60cb6ac7104c9b2d857e63..0000000000000000000000000000000000000000 --- a/docs/doxygen/_add_together_8pm.html +++ /dev/null @@ -1,145 +0,0 @@ - - - - - - -ensembl-hive: modules/Bio/EnsEMBL/Hive/Examples/LongMult/RunnableDB/AddTogether.pm File Reference - - - - - - - - - - - - - -
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-
ensembl-hive -  2.4 -
-
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-
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-
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- All Classes Namespaces Files Functions
- - -
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AddTogether.pm File Reference
-
-
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-Classes

class  Bio::EnsEMBL::Hive::Examples::LongMult::RunnableDB::AddTogether
 
- - - - - - - - - - - - - -

-Namespaces

 Bio
 
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 Bio::EnsEMBL::Hive
 
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class  Bio::EnsEMBL::Hive::DBSQL::AnalysisAdaptor
 
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class  Bio::EnsEMBL::Hive::AnalysisCtrlRule
 
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class  Bio::EnsEMBL::Hive::DBSQL::AnalysisCtrlRuleAdaptor
 
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class  Bio::EnsEMBL::Hive::DBSQL::AnalysisDataAdaptor
 
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class  Bio::EnsEMBL::Hive::AnalysisJob
 
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class  Bio::EnsEMBL::Hive::DBSQL::AnalysisJobAdaptor
 
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class  Bio::EnsEMBL::Hive::AnalysisStats
 
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class  Bio::EnsEMBL::Hive::DBSQL::AnalysisStatsAdaptor
 
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class  Bio::EnsEMBL::Hive::Examples::SystemCmd::PipeConfig::AnyCommands_conf
 
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class  Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig::ApplyToDatabases_conf
 
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class  Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
 
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- - - - diff --git a/docs/doxygen/_cacheable_8pm.html b/docs/doxygen/_cacheable_8pm.html deleted file mode 100644 index 72a5513c2b6277090af63b23f68587cbdc09a02f..0000000000000000000000000000000000000000 --- a/docs/doxygen/_cacheable_8pm.html +++ /dev/null @@ -1,139 +0,0 @@ - - - - - - -ensembl-hive: modules/Bio/EnsEMBL/Hive/Cacheable.pm File Reference - - - - - - - - - - - - - -
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class  Bio::EnsEMBL::Hive::Cacheable
 
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class  Bio::EnsEMBL::Hive::Examples::GC::RunnableDB::CalcOverallPercentage
 
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class  Bio::EnsEMBL::Hive::Utils::Collection
 
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class  Bio::EnsEMBL::Hive::Examples::Factories::PipeConfig::CompressFiles_conf
 
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Config.pm File Reference
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class  Bio::EnsEMBL::Hive::Utils::Config
 
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class  Bio::EnsEMBL::Hive::Configurable
 
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class  Bio::EnsEMBL::Hive::DBSQL::CoreDBConnection
 
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class  Bio::EnsEMBL::Hive::Examples::GC::RunnableDB::CountATGC
 
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class  Bio::EnsEMBL::Hive::DBSQL::DBAdaptor
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DF02_Spider_conf
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DF03_Semaphores_conf
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DF04_Semaphores_conf
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DF07_Skipping_conf
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DF08_BigChoice_conf
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DF09_MultiBranch_conf
 
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class  Bio::EnsEMBL::Hive::PipeConfig::DFTest_conf
 
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class  Bio::EnsEMBL::Hive::RunnableDB::DatabaseDumper
 
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class  Bio::EnsEMBL::Hive::DataflowRule
 
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class  Bio::EnsEMBL::Hive::DBSQL::DataflowRuleAdaptor
 
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class  Bio::EnsEMBL::Hive::DataflowTarget
 
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class  Bio::EnsEMBL::Hive::DBSQL::DataflowTargetAdaptor
 
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