From d348a64e43d42bdba636f324dc007c4f0a00cc37 Mon Sep 17 00:00:00 2001
From: Albert Vilella <avilella@ebi.ac.uk>
Date: Fri, 3 Apr 2009 09:18:32 +0000
Subject: [PATCH] adding maximise_concurrency and quick HIGHMEM option passing
---
scripts/runWorker.pl | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/scripts/runWorker.pl b/scripts/runWorker.pl
index d96b74f36..c7c737ecc 100755
--- a/scripts/runWorker.pl
+++ b/scripts/runWorker.pl
@@ -50,6 +50,8 @@ GetOptions('help' => \$help,
'batchsize=i' => \$self->{'batch_size'},
'limit=i' => \$self->{'job_limit'},
'lifespan=i' => \$self->{'lifespan'},
+ 'maximise_concurrency=i' => \$self->{'maximise_concurrency'},
+ 'highmem=i' => \$self->{'highmem'},
'outdir=s' => \$self->{'outdir'},
'bk=s' => \$self->{'beekeeper'},
'pid=s' => \$self->{'process_id'},
@@ -102,6 +104,8 @@ unless($DBA and $DBA->isa("Bio::EnsEMBL::Hive::DBSQL::DBAdaptor")) {
}
my $queen = $DBA->get_Queen();
+$queen->{maximise_concurrency} = 1 if ($self->{maximise_concurrency});
+$queen->{highmem} = $self->{highmem} if ($self->{highmem});
################################
# LSF submit system dependency
@@ -130,7 +134,6 @@ if($self->{'logic_name'}) {
}
$self->{'analysis_id'} = $analysis->dbID;
}
-
if($self->{'analysis_id'} and $self->{'input_id'}) {
$self->{'analysis_job'} = new Bio::EnsEMBL::Hive::AnalysisJob;
$self->{'analysis_job'}->input_id($self->{'input_id'});
@@ -161,6 +164,7 @@ unless($worker) {
exit(0);
}
+$worker->{HIGHMEM} = $self->{highmem} if($self->{highmem});
$worker->debug($self->{'debug'}) if($self->{'debug'});
if(defined($self->{'outdir'})) { $worker->output_dir($self->{'outdir'}); }
--
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