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ensembl-gh-mirror
ensembl-hive
Commits
df7ed691
Commit
df7ed691
authored
Jan 08, 2021
by
nwillhoft
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/*
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* Copyright [2016-202
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* Copyright [2016-202
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* Copyright [2016-202
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] EMBL-European Bioinformatics Institute
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] EMBL-European Bioinformatics Institute
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] EMBL-European Bioinformatics Institute
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] EMBL-European Bioinformatics Institute
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
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] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
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] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
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] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/Examples/Factories/PipeConfig/ChangeMySQLEngine_conf.pm
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
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] EMBL-European Bioinformatics Institute
Copyright [2016-202
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] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
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] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
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] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
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@@ -62,7 +62,7 @@ Bio::EnsEMBL::Hive::Examples::Kmer::PipeConfig::KmerPipelineHoH_conf
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/Kmer/RunnableDB/CompileCountsAoH.pm
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@@ -18,7 +18,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/Kmer/RunnableDB/CompileCountsHoA.pm
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@@ -18,7 +18,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/Kmer/RunnableDB/CompileCountsHoH.pm
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@@ -18,7 +18,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/Kmer/RunnableDB/CountKmers.pm
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@@ -25,7 +25,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/Kmer/RunnableDB/SplitSequence.pm
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@@ -34,7 +34,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultSt_javaconf.pm
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@@ -45,7 +45,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultWfClient_conf.pm
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@@ -40,7 +40,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/LongMult/PipeConfig/LongMultWfServer_conf.pm
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@@ -40,7 +40,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Examples/QPT/PipeConfig/AAA_conf.pm
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/Examples/QPT/PipeConfig/BBB_conf.pm
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/Examples/QPT/PipeConfig/CCC_conf.pm
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/Examples/QPT/PipeConfig/DDD_conf.pm
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=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/HivePipeline.pm
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df7ed691
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/Scripts/PeekJob.pm
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#!/usr/bin/env perl
# Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
# Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
# Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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modules/Bio/EnsEMBL/Hive/Semaphore.pm
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@@ -14,7 +14,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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modules/Bio/EnsEMBL/Hive/Utils/RESTclient.pm
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@@ -31,7 +31,7 @@
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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scripts/dev/make_doxygen.pl
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@@ -170,7 +170,7 @@ An internal eHive script for regenerating the Doxygen documentation.
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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scripts/dev/simple_init.py
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df7ed691
#!/usr/bin/env python3
# Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
# Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
# Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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scripts/dev/sql2rst.pl
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df7ed691
#!/usr/bin/env perl
# Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
# Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
# Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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scripts/dev/update_vm_for_hive.sh
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df7ed691
#!/bin/sh
# Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
# Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
# Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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scripts/peekJob.pl
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@@ -142,7 +142,7 @@ print this help
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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scripts/visualize_jobs.pl
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@@ -641,7 +641,7 @@ Print this help message
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
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sql/patch_2005-02-22.sql
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-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
-- Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
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sql/patch_2005-03-04.sql
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df7ed691
-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
-- Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
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sql/patch_2007-11-16.sql
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-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
-- Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
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sql/patch_2009-12-11.sql
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-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
-- Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
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sql/patch_2009-12-15.sql
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-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
-- Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
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sql/patch_2010-02-25.sql
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df7ed691
-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
-- Copyright [2016-202
0
] EMBL-European Bioinformatics Institute
-- Copyright [2016-202
1
] EMBL-European Bioinformatics Institute
--