Commit fdf07732 authored by Leo Gordon's avatar Leo Gordon
Browse files

allow "topping up" configs to work properly

parent 2f9ef94f
......@@ -236,6 +236,7 @@ sub process_options {
$self->pipeline_wide_parameters();
$self->resource_classes();
$self->pipeline_analyses();
$self->dbconn_2_url('pipeline_db'); # force vivification of the whole 'pipeline_db' structure (used in run() )
# you can override parsing of commandline options if creating pipelines by a script - just provide the overriding hash
my $cmdline_options = $self->{_cmdline_options} = shift @_ || $self->_load_cmdline_options();
......
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