This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 16 Dec, 2020 2 commits
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Carla Cummins authored
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Carla Cummins authored
peekJob.pl allows us to check which params a job has access to
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- 20 Nov, 2020 3 commits
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Brandon Walts authored
add simulated output directories to the ascii.t exclude list so that we can keep our simulated lsid output identical to the expected output
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Brandon Walts authored
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Brandon Walts authored
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- 12 Nov, 2020 7 commits
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Brandon Walts authored
* version/2.4: Check that LSF detection works as expected bugfix: keep the modified $PATH local to the test, otherwise it will bleed into the other tests Make sure this is a real LSF (or openlava) and exclude Slurm clusters that ship "lsid" Don't use the enhanced mode as it messes up most analysis names
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Brandon Walts authored
* version/2.3: Don't use the enhanced mode as it messes up most analysis names
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Brandon Walts authored
* version/2.2: Don't use the enhanced mode as it messes up most analysis names
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Matthieu Muffato authored
In enhanced mode, the string "a_b" is displayed as "a" followed by "b" in subscript. Most of our analyses use underscore, so the fix is to disable the enhanced mode.
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- 14 Oct, 2020 1 commit
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dependabot[bot] authored
Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1. - [Release notes](https://github.com/junit-team/junit4/releases) - [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.12.md) - [Commits](https://github.com/junit-team/junit4/compare/r4.12...r4.13.1 ) Signed-off-by:
dependabot[bot] <support@github.com>
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- 06 Oct, 2020 2 commits
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Matthieu Muffato authored
This assumes apt-get update has been run
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- 05 Oct, 2020 4 commits
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Brandon Walts authored
* version/2.4: Add substitution example + one hash, to TestRunnable.py Comment not a question Allow a single hash in a string without substitution (in python wrapper)
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Matthieu Barba authored
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Matthieu Barba authored
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Matthieu Barba authored
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- 01 Jul, 2020 2 commits
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Matthieu Muffato authored
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Matthieu Muffato authored
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- 30 Jun, 2020 7 commits
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Brandon Walts authored
* version/2.4: Don't attempt removing objects that haven't been stored Somehow, only 9.6 seconds seem to elapse on Travis when sleeping 10 seconds Simplified the Runnable: no need to check for the overhead, checking that it slept 10 seconds suffices
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Matthieu Muffato authored
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Matthieu Muffato authored
This happens quite often, so let's bake it in the test and make Travis pass.
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Matthieu Muffato authored
Simplified the Runnable: no need to check for the overhead, checking that it slept 10 seconds suffices
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Brandon Walts authored
* version/2.4: bugfix: wrong number of arguments bugfix: autoflow is a property of the job, not the runnable
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Matthieu Muffato authored
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Matthieu Muffato authored
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- 14 May, 2020 12 commits
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Matthieu Muffato authored
* version/2.4: Regenerated the scripts documentation using a recent toolchain Regenerated the Doxygen documentation with a recent Doxygen Regenerated the Doxygen documentation with a recent Doxygen Restored compatibility with recent versions of Doxygen Regenerated the Doxygen documentation with a recent Doxygen Regenerated the scripts documentation using a recent toolchain Regenerated the Doxygen documentation with a recent Doxygen Restored compatibility with recent versions of Doxygen Regenerated the scripts documentation using a recent toolchain Regenerated the Doxygen documentation with a recent Doxygen Restored compatibility with recent versions of Doxygen
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
* version/2.3: Regenerated the Doxygen documentation with a recent Doxygen Regenerated the scripts documentation using a recent toolchain Regenerated the Doxygen documentation with a recent Doxygen Restored compatibility with recent versions of Doxygen Regenerated the scripts documentation using a recent toolchain Regenerated the Doxygen documentation with a recent Doxygen Restored compatibility with recent versions of Doxygen
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Matthieu Muffato authored
pm=C means that Doxygen will receive C-style annotations for *.pm files, as ensembldoxygenfilter.pl returns. This option is only needed for Doxygen >1.8.7
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
* version/2.2: Regenerated the scripts documentation using a recent toolchain Regenerated the Doxygen documentation with a recent Doxygen Restored compatibility with recent versions of Doxygen
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Matthieu Muffato authored
pm=C means that Doxygen will receive C-style annotations for *.pm files, as ensembldoxygenfilter.pl returns. This option is only needed for Doxygen >1.8.7
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Matthieu Muffato authored
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