This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 07 May, 2015 1 commit
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Leo Gordon authored
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- 27 Apr, 2015 1 commit
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Leo Gordon authored
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- 08 Apr, 2015 1 commit
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Matthieu Muffato authored
The last lines contain the resource usage for each job. Instead, find the line that introduces the overall statistics.
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- 27 Mar, 2015 3 commits
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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- 06 Mar, 2015 1 commit
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Leo Gordon authored
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- 05 Mar, 2015 1 commit
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Leo Gordon authored
bugfix: avoid getting negative analysis_stats.ready_job_count by separating the "grab" and "release" phases of batching
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- 26 Feb, 2015 1 commit
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Leo Gordon authored
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- 24 Feb, 2015 5 commits
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Leo Gordon authored
Conflicts: modules/Bio/EnsEMBL/Hive/DBSQL/BaseAdaptor.pm
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
(cherry-picked from version/2.1 branch)
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Leo Gordon authored
(cherry-picked from version/2.1 branch)
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- 17 Feb, 2015 1 commit
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Leo Gordon authored
safeguarding the 56->62 patches from being applied in a wrong order (or following an incomplete one)
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- 10 Feb, 2015 1 commit
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Leo Gordon authored
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- 04 Feb, 2015 2 commits
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Leo Gordon authored
This reverts commit 7d12f586.
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Leo Gordon authored
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- 16 Jan, 2015 3 commits
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Leo Gordon authored
Conflicts: modules/Bio/EnsEMBL/Hive/Worker.pm
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Leo Gordon authored
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Leo Gordon authored
Conflicts: modules/Bio/EnsEMBL/Hive/Worker.pm
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- 05 Jan, 2015 1 commit
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Matthieu Muffato authored
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- 22 Dec, 2014 2 commits
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Matthieu Muffato authored
* version/2.0: Backported the recent changes from Ensembl's DBConnection
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Matthieu Muffato authored
- use placeholders in "do" commands
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- 05 Nov, 2014 4 commits
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
bugfix [to ee51e74e] : restore the password-hiding functionality between beekeeper.pl and runWorker.pl
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- 29 Oct, 2014 3 commits
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Matthieu Muffato authored
* version/2.0: The main index is docs/index.html
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Matthieu Muffato authored
* version/1.9: The main index is docs/index.html
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Matthieu Muffato authored
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- 27 Oct, 2014 6 commits
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
PR #5
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Roy Storey authored
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Roy Storey authored
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Roy Storey authored
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- 25 Oct, 2014 2 commits
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Matthieu Muffato authored
(and probably RUNLIMIT as well) The problem was in Queen::register_worker_death(). The code fetches the current role, finalizes it, and then updates the worker table. The role that is fetched from the database with fetch_last_unfinished_by_worker_id() is not connected to any workers and later, when AnalysisJobAdaptor::release_undone_jobs_from_role() needs to know the cause of death and the number of work done by the worker, the role would load another instance of the worker using the information currently stored in the database, that is: before it has been updated. Hence, the code was complaining that cause_of_death was not populated. By associating the role to the worker, we allow the method to read the existing information
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Matthieu Muffato authored
This is done by setting "self_burial" to 0
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- 21 Oct, 2014 1 commit
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Leo Gordon authored
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