Commits · 1c3a4c1f5ee7d30a5297803d59cddc65c7cfa0f7 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated May 27, 2022.

05 Oct, 2021 1 commit
- update documentation related to JSON serialisation of events including dataflow · 43f849ae
  Brandon Walts authored Sep 14, 2021
  
  43f849ae
08 Jan, 2021 1 commit
- Yearly copyright update · 7745add0
  nwillhoft authored Jan 07, 2021
  
  7745add0
06 May, 2020 1 commit
- Better detection of the process being killed · e0bb4f7e
  Matthieu Muffato authored May 06, 2020
  
  e0bb4f7e
05 May, 2020 1 commit
- Better detection of the process being killed · 1ceec998
  Matthieu Muffato authored Apr 24, 2020
  
  1ceec998
07 Jan, 2020 1 commit
- copyright update 2020 · 587cb6ce
  Brandon Walts authored Jan 07, 2020
  
  587cb6ce
04 Jan, 2019 1 commit
- 2019 copyright update · eb200cbb
  Brandon Walts authored Jan 04, 2019
  
  eb200cbb
04 Jul, 2018 1 commit
- Added support for bash errexit mode · 048163d3
  Matthieu Muffato authored May 20, 2017
  
  048163d3
26 May, 2018 1 commit
- Copyright update · 0f408787
  Matthieu Muffato authored May 26, 2018
  
  0f408787
15 Mar, 2018 5 commits
- Also record how long it took to run the command · bf465790
  Matthieu Muffato authored Mar 09, 2018
  
  bf465790
- Capture the standard output too · 0a90f40e
  Matthieu Muffato authored Mar 09, 2018
  
  0a90f40e
- Added an option to limit the runtime of external commands · c8c6f80a
  Matthieu Muffato authored Mar 09, 2018
```
When the allowed runtime is exceeded, the Runnable dataflows on branch
-2 (RUNLIMIT).
```
  c8c6f80a
- Factored out a method that tests whether the special branch is wired or not · c4674ae7
  Matthieu Muffato authored Mar 12, 2018
  
  c4674ae7
- Expanded the role of complete_early by allowing it to do a final dataflow · 6326a32d
  Matthieu Muffato authored Mar 12, 2018
  
  6326a32d
11 Sep, 2017 1 commit
- Added an option in SystemCmd to parse a file in order to generate dataflow events · d1c1aa95
  Matthieu Muffato authored May 20, 2017
  
  d1c1aa95
20 May, 2017 1 commit
- Added support for bash errexit mode · e6bd43f7
  Matthieu Muffato authored May 20, 2017
  
  e6bd43f7
12 Jan, 2017 1 commit
- Copyright update · b3398212
  Matthieu Muffato authored Jan 12, 2017
  
  b3398212
06 Jul, 2016 6 commits
- Copyright update. We are now EBI o/ · 94978072
  Matthieu Muffato authored Jul 06, 2016
  
  94978072
- Copyright update. We are now EBI o/ · acdb12c0
  Matthieu Muffato authored Jul 06, 2016
  
  acdb12c0
- Copyright update. We are now EBI o/ · acd45876
  Matthieu Muffato authored Jul 06, 2016
  
  acd45876
- Copyright update. We are now EBI o/ · 5dfede22
  Matthieu Muffato authored Jul 06, 2016
  
  5dfede22
- Copyright update. We are now EBI o/ · 506adc4b
  Matthieu Muffato authored Jul 06, 2016
  
  506adc4b
- Copyright update. We are now EBI o/ · 966f9b31
  Matthieu Muffato authored Jul 06, 2016
  
  966f9b31
20 Jun, 2016 1 commit
- bugfix: "return_codes_2_branches" may be missing, in which case skip this part · f98db38b
  Matthieu Muffato authored Jun 20, 2016
  
  f98db38b
19 May, 2016 1 commit
- avoid repeating the input_id parameter, as it is done centrally in AnalysisJob::dataflow_output_id · fde618c7
  Leo Gordon authored May 18, 2016
  
  fde618c7
18 Apr, 2016 1 commit
- bugifx: don't mark the job as DONE if it hasn't successfully dataflown to #-1 · 4e2f9df2
  Matthieu Muffato authored Apr 18, 2016
  
  4e2f9df2
03 Feb, 2016 2 commits
- Added a general-purpose method in Process to run any command with system() · e2ba567b
  Matthieu Muffato authored Nov 25, 2015
  
  e2ba567b
- Better handling of negative return values · f3e00961
  Matthieu Muffato authored Feb 03, 2016
  
  f3e00961
29 Jan, 2016 1 commit
- Updated the copyright year --> 2016 · 758dbbd1
  Leo Gordon authored Jan 29, 2016
  
  758dbbd1
23 Nov, 2015 2 commits
- 1 call to disconnect_if_idle() is enough · 0cb6cbdb
  Matthieu Muffato authored Nov 16, 2015
  
  0cb6cbdb
- Added an option to accurately catch errors in pipes (needs bash to work) · 3bfa527e
  Matthieu Muffato authored Nov 16, 2015
  
  3bfa527e
20 Aug, 2015 1 commit
- docfix: These Runnables only understands $self->param() · 7d211c3f
  Matthieu Muffato authored Aug 20, 2015
  
  7d211c3f
17 Jun, 2015 1 commit
- bugfix: SystemCmd could not notice that the process was killed · a305ecc0
  Matthieu Muffato authored Jun 17, 2015
  
  a305ecc0
22 May, 2015 1 commit
- text_to_shell_lit has already moved to Utils.pm · 7bd3b031
  Matthieu Muffato authored May 22, 2015
  
  7bd3b031
14 May, 2015 1 commit
- deprecated and removed support for strict_hash_format() method in Runnables · 97e17d94
  Leo Gordon authored May 14, 2015
  
  97e17d94
20 Mar, 2015 1 commit
- Utils.pm method to deal with system() arguments · 10210138
  Matthieu Muffato authored Mar 20, 2015
```
Join the arguments if they are given as an array-ref, and take care of the
quotes !
```
  10210138
19 Mar, 2015 4 commits
- SystemCmd now accepts pipes and redirections in the command (when given an array) · 973b577f
  Matthieu Muffato authored Mar 16, 2015
  
  973b577f
- Automatic dataflow on #-1 for Java OutOfMemory errors · 2a0ea6c1
  Matthieu Muffato authored Mar 15, 2015
  
  2a0ea6c1
- New parameter to map exit codes to dataflows · 67390b38
  Matthieu Muffato authored Mar 15, 2015
  
  67390b38
- Moved the interpretation of the command's status to write_output() · 5c756354
  Matthieu Muffato authored Mar 19, 2015
  
  5c756354
18 Mar, 2015 1 commit
- Use Tiny::Capture to run the command in SystemCmd · de8ff48f
  Matthieu Muffato authored Jan 28, 2015
```
It allows to capture stderr, and output a more useful message when the command fails.
```
  de8ff48f