Commits · 32f3e08cbe20173569fbc31e93770fa9afe5f521 · ensembl-gh-mirror / ensembl-hive · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Feb 01, 2023.

29 Feb, 2016 2 commits
- group conditions visually · 32f3e08c
  Leo Gordon authored Feb 29, 2016
  
  32f3e08c
- getting rid of the undef warning in case of scalar Accu · c95a6fa1
  Leo Gordon authored Feb 29, 2016
  
  c95a6fa1
26 Feb, 2016 2 commits
- schema_change: job.status goes back to ENUM since it was indexed much more efficiently · 946acd31
  Leo Gordon authored Feb 26, 2016
  
  946acd31
- Include the MD5 checksum in the query, otherwise MySQL cannot use any index · a1dc0d22
  Matthieu Muffato authored Feb 26, 2016
  
  a1dc0d22
25 Feb, 2016 1 commit
- More precision documentation of the worker_resource_usage table · 6fef84d0
  Matthieu Muffato authored Feb 25, 2016
  
  6fef84d0
16 Feb, 2016 12 commits
- Clearer message by saying which database is missing the object · 1e27abd8
  Matthieu Muffato authored Feb 10, 2016
  
  1e27abd8
- Updated to handle non-integer JSON::False and JSON::True as booleans (rather than integers) · 3778d2a0
  Brandon Walts authored Feb 16, 2016
  
  3778d2a0
- updated beekeepers to run on local meadow for access to sqlite db · 330faf6f
  Brandon Walts authored Feb 16, 2016
  
  330faf6f
- cleanup Changelog · 2ef3d3af
  Brandon Walts authored Feb 16, 2016
  
  2ef3d3af
- Factory is now Factories · 83e666b4
  Brandon Walts authored Feb 16, 2016
  
  83e666b4
- updated classpaths · f64f2f06
  Brandon Walts authored Feb 16, 2016
  
  f64f2f06
- Grouped all factory-related examples under Factories · ae3c8c19
  Brandon Walts authored Feb 16, 2016
  
  ae3c8c19
- further Changelog updates · ebf284d4
  Brandon Walts authored Feb 16, 2016
  
  ebf284d4
- Updated classpaths · d3b2193f
  Brandon Walts authored Feb 16, 2016
  
  d3b2193f
- updated Changelog · 25272ea8
  Brandon Walts authored Feb 16, 2016
  
  25272ea8
- moved ApplyToDatabases_conf under new JobFactory examples dir · ed9ccfa4
  Brandon Walts authored Feb 16, 2016
  
  ed9ccfa4
- added PipeConfig subdir for DbCmd and SystemCmd · 749a2e95
  Brandon Walts authored Feb 16, 2016
  
  749a2e95
12 Feb, 2016 4 commits
- added gcpct test · 792be9e6
  Brandon Walts authored Feb 12, 2016
  
  792be9e6
- made inputfile a self->o param · 41e0fe59
  Brandon Walts authored Feb 12, 2016
  
  41e0fe59
- Updated classpaths in FailureTest PipeConfigs and runnables · b62ec09c
  Brandon Walts authored Feb 12, 2016
  
  b62ec09c
- moved more PipeConfigs and Runnables into Examples · 516511b6
  Brandon Walts authored Feb 12, 2016
  
  516511b6
11 Feb, 2016 6 commits
- fixed classpath problem · 57a20fbd
  Brandon Walts authored Feb 11, 2016
  
  57a20fbd
- moved Examples under modules/, classpaths updated · 4cd4bf83
  Brandon Walts authored Feb 11, 2016
  
  4cd4bf83
- moved LongMult and GC directories under modules/Bio/EnsEMBL/Hive/Examples/ · 4bbd72e9
  Brandon Walts authored Feb 11, 2016
  
  4bbd72e9
- fixed classpaths · a1bc677f
  Brandon Walts authored Feb 11, 2016
  
  a1bc677f
- cleanup of POD · 47b4e6d9
  Brandon Walts authored Feb 11, 2016
  
  47b4e6d9
- cleanup POD · cedf99c5
  Brandon Walts authored Feb 11, 2016
  
  cedf99c5
10 Feb, 2016 13 commits
- Merge branch 'master' of github.com:Ensembl/ensembl-hive · 3a19ca9b
  Brandon Walts authored Feb 10, 2016
  
  3a19ca9b
- extended the test to support the new by-field filtering pattern syntax · d04f5fea
  Leo Gordon authored Feb 10, 2016
  
  d04f5fea
- Merge branch 'master' of github.com:Ensembl/ensembl-hive · 5c31ce0f
  Brandon Walts authored Feb 10, 2016
  
  5c31ce0f
- updated tests to point to LongMult in examples · 85492c3e
  Brandon Walts authored Feb 10, 2016
  
  85492c3e
- updated classpaths in LongMult pipeconfigs and runnables · 156fbbe2
  Brandon Walts authored Feb 10, 2016
  
  156fbbe2
- updated classpaths in GCPct runnables and pipeconfigs · b94a9bc3
  Brandon Walts authored Feb 10, 2016
  
  b94a9bc3
- moved LongMult runnables and pipeconfigs into examples · df56a665
  Brandon Walts authored Feb 10, 2016
  
  df56a665
- added GC pct modules to examples · 645caa63
  Brandon Walts authored Feb 10, 2016
  
  645caa63
- compatibility fix: making sure the test suite runs on MacOSX as well · d5ff8b06
  Leo Gordon authored Feb 10, 2016
  
  d5ff8b06
- bugfix: make sure when dataflow happens across pipeline boundaries, we do not... · b1c5aa60
  Leo Gordon authored Feb 10, 2016
```
bugfix: make sure when dataflow happens across pipeline boundaries, we do not carry over prev_job_id -- thanks to Matthieu for reporting
```
  b1c5aa60
- Disconnect from the database when it is not needed any more · 2b8ef4e3
  Matthieu Muffato authored Feb 10, 2016
  
  2b8ef4e3
- FastaFactory can now output chunks in a different format · ff7226f4
  Matthieu Muffato authored Feb 10, 2016
  
  ff7226f4
- Use a recent BioPerl in Travis · b2495472
  Matthieu Muffato authored Feb 10, 2016
  
  b2495472