Commits · 394ad6471af9cf7262aa8fb4ed585c8e768b9b7a · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Jan 29, 2023.

23 May, 2012 2 commits
- reuse the meadow->name() method to check for availability [cleanup] · 394ad647
  Leo Gordon authored May 23, 2012
  
  394ad647
- pass in a Valley instead of the current_meadow (preparatory) · 37e63c93
  Leo Gordon authored May 23, 2012
  
  37e63c93
22 May, 2012 4 commits
- kill-worker-process-by-worker-id: simplified specific Meadow code by moving... · 21c06220
  Leo Gordon authored May 22, 2012
```
kill-worker-process-by-worker-id: simplified specific Meadow code by moving general checks out of them
```
  21c06220
- the Meadow hash is now by type, so no need to iterate to find Meadow-by-Worker · 3fcd5f98
  Leo Gordon authored May 22, 2012
  
  3fcd5f98
- untangling a bit. Queen does not need to re-sync and beekeeper does not need to fetch · 60f1d5e5
  Leo Gordon authored May 22, 2012
  
  60f1d5e5
- simplified output interface from schedule_workers and schedule_workers_resync_if_necessary · 2af05379
  Leo Gordon authored May 22, 2012
  
  2af05379
21 May, 2012 1 commit
- valley now contains available meadow objects, not classes; beekeeper contains... · 2dcf5e7d
  Leo Gordon authored May 21, 2012
```
valley now contains available meadow objects, not classes; beekeeper contains corrected algorithm for killing a worker
```
  2dcf5e7d
18 May, 2012 2 commits
- added schema and API support for meadow_name · 229783f5
  Leo Gordon authored May 18, 2012
  
  229783f5
- fixed a typo bug · 8b2f8d26
  Leo Gordon authored May 18, 2012
  
  8b2f8d26
17 May, 2012 1 commit
- rename meadow_name to meadow_type to match the rest of the repository, before it is too late · 8f430089
  Leo Gordon authored May 17, 2012
  
  8f430089
12 May, 2012 1 commit
- moved meadow identification code to Valley.pm · 16997244
  Leo Gordon authored May 12, 2012
  
  16997244
11 May, 2012 2 commits
- moved the "meadow-collection" code into a separate class called "Valley" · 0cab5341
  Leo Gordon authored May 11, 2012
  
  0cab5341
- a new class to represent a collection of available Meadows · a8d596d6
  Leo Gordon authored May 11, 2012
  
  a8d596d6
10 May, 2012 1 commit
- removed obsolete -maximise_concurrency and -batch_size options from both scripts · 18dfceb0
  Leo Gordon authored May 10, 2012
  
  18dfceb0
09 May, 2012 1 commit

bugfix+feature: -local_cpus renamed into -total_workers_max and so made... · 346613a2

Leo Gordon authored May 09, 2012

bugfix+feature: -local_cpus renamed into -total_workers_max and so made available for any meadow (not just LOCAL). Plus some renames

346613a2

08 May, 2012 3 commits
- make beekeeper more Meadow-agnostic and allow it to automatically find... · 337fee35
  Leo Gordon authored May 08, 2012
```
make beekeeper more Meadow-agnostic and allow it to automatically find alternative Meadow modules in the INC list
```
  337fee35
- check the availability of this Meadow on the given machine · 364d341e
  Leo Gordon authored May 08, 2012
  
  364d341e
- new function for finding all modules in a "directory" across the whole INC list · ad03106b
  Leo Gordon authored May 08, 2012
  
  ad03106b
02 May, 2012 4 commits
- removed create_rule() method that is no longer used · da4b0bb0
  Leo Gordon authored May 02, 2012
  
  da4b0bb0
- explicit new->store rules; retiring create_rule(); switch to using toString() · 2929ae1a
  Leo Gordon authored May 02, 2012
  
  2929ae1a
- switch to using uniform toString() diagnostic method · 82b427c0
  Leo Gordon authored May 02, 2012
  
  82b427c0
- move input_id_template stringification into DFR class · 2416bd72
  Leo Gordon authored May 02, 2012
  
  2416bd72
01 May, 2012 5 commits
- remove_by_condition_analysis_url() is no longer used by Compara, so has been removed · 0cbb4afd
  Leo Gordon authored May 01, 2012
  
  0cbb4afd
- a Process does not need a reference to the Queen · 8811e268
  Leo Gordon authored May 01, 2012
  
  8811e268
- analyze_tables() does not seem to be used anymore · d622eaf3
  Leo Gordon authored May 01, 2012
  
  d622eaf3
- bugfix: make sure runtime_msec is stored even when a job dies · e47201c5
  Leo Gordon authored May 01, 2012
  
  e47201c5
- no longer used · 04ad0fab
  Leo Gordon authored May 01, 2012
  
  04ad0fab
23 Apr, 2012 1 commit
- code for showing semaphores as nested boxes · 7e45b86c
  Leo Gordon authored Apr 23, 2012
  
  7e45b86c
16 Apr, 2012 1 commit
- changes during rel.67 · 9ddf14ed
  Leo Gordon authored Apr 16, 2012
  
  9ddf14ed
27 Mar, 2012 1 commit
- a typo in comments · 076af646
  Leo Gordon authored Mar 27, 2012
  
  076af646
26 Mar, 2012 2 commits
- schema_version=67 · a81c8863
  Matthieu Muffato authored Mar 26, 2012
  
  a81c8863
- schema_version=67 · 0663c243
  Matthieu Muffato authored Mar 26, 2012
  
  0663c243
20 Mar, 2012 1 commit
- code optimization suggested by Matthieu · a1d37d9e
  Leo Gordon authored Mar 20, 2012
  
  a1d37d9e
19 Mar, 2012 1 commit
- weaken the link back from the object back to the adaptor · 4da57a10
  Leo Gordon authored Mar 19, 2012
  
  4da57a10
07 Mar, 2012 2 commits
- added support for reading compressed files · 595d9e36
  Leo Gordon authored Mar 07, 2012
  
  595d9e36
- a Bio::Seq example factory Runnable and a matching PipeConfig file · 5cb1771d
  Leo Gordon authored Mar 07, 2012
  
  5cb1771d
01 Mar, 2012 2 commits
- improved STDOUT/STDERR redirection into files; removal of job logs on success · f0edaecf
  Leo Gordon authored Mar 01, 2012
  
  f0edaecf
- a special module to deal with stacks of filehandle redirection · 2edfa351
  Leo Gordon authored Mar 01, 2012
  
  2edfa351
24 Feb, 2012 1 commit
- pass debug level parameter from beekeeper.pl to runWorker.pl · 35b2e6ec
  Leo Gordon authored Feb 24, 2012
  
  35b2e6ec
23 Feb, 2012 1 commit
- bugfix: only store values that have been set - avoid overriding defaults · 48f302a0
  Leo Gordon authored Feb 23, 2012
  
  48f302a0