This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 24 Nov, 2017 3 commits
-
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
- 21 Nov, 2017 2 commits
-
-
Brandon Walts authored
-
Brandon Walts authored
-
- 14 Nov, 2017 1 commit
-
-
Matthieu Muffato authored
Workers were in fact designed not to update the analysis_stats table too frequently. The "done_job_count" counter is updated every two minutes. This reverts commit 258cbf59.
-
- 13 Nov, 2017 1 commit
-
-
Matthieu Muffato authored
Otherwise, the counter was only updated by the garbage collection process, or by the hard sync. Before, we could see the issue by doing this: ``` \## in one terminal init_pipeline.pl Bio::EnsEMBL::Hive::Examples::LongMult::PipeConfig::LongMult_conf -pipeline_url $PIPELINE_URL \# to have plenty of jobs to test on for i in `seq 1 50`; do for j in `seq 1 50`; do seed_pipeline.pl -url $PIPELINE_URL -logic_name take_b_apart -input_id "{'a_multiplier' => 2112974${i}29187, 'b_multiplier' => 3273${j}58788}"; done; done \# loop but don't submit anything beekeeper.pl -url $PIPELINE_URL -submit_workers_max 0 -loop -sleep 0.05 \## in another terminal runWorker.pl -url $PIPELINE_URL -analyses_pattern 1 ``` In the beekeeper output the counter of done jobs remains 0, and the in_progress counter keeps on increasing
-
- 09 Nov, 2017 5 commits
-
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
- 26 Sep, 2017 16 commits
-
-
Matthieu Muffato authored
* version/2.2: Set an empty string to avoid a warning Updated the installation instructions
-
Matthieu Muffato authored
* version/2.1: Set an empty string to avoid a warning Updated the installation instructions Conflicts: docs/install.html scripts/db_cmd.pl
-
Matthieu Muffato authored
* version/2.0: Set an empty string to avoid a warning Updated the installation instructions
-
Matthieu Muffato authored
* version/1.9: Set an empty string to avoid a warning Updated the installation instructions (we e73 is one of the few versions that actually work) Conflicts: docs/install.html
-
Matthieu Muffato authored
-
Matthieu Muffato authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Matthieu Muffato authored
* version/2.2: bugfix: allow dashes in database names Conflicts: scripts/db_cmd.pl
-
Matthieu Muffato authored
* version/2.1: bugfix: allow dashes in database names
-
Matthieu Muffato authored
* version/2.0: bugfix: allow dashes in database names
-
Matthieu Muffato authored
* version/1.9: bugfix: allow dashes in database names
-
Matthieu Muffato authored
-
- 27 Jun, 2017 5 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
- 25 Jun, 2017 1 commit
-
-
Zhicheng Liu authored
* Use File::Glob to get the list of filenames Previously backtick ls command was used to fetch the list of sql patches filenames. By using backtick it is required to fork a new process. This would potentially be a problem for a running process that uses large amount of memory. If there is not enough spare memory left in the system, the fork operation could be aborted because of "cannot allocate memory" error. Fixes ENSEMBL-4823. [ The PR was added to 2.2 but somehow discarded when 2.2 was merged into 2.3 ] Conflicts: modules/Bio/EnsEMBL/Hive/DBSQL/SqlSchemaAdaptor.pm
-
- 23 May, 2017 6 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-