Commits · 3f1b4576e2258d53b68c1b99d94134e069f9bce7 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Aug 15, 2022.

23 May, 2012 3 commits
- pipeline_name now gets propagated to all meadows of the Valley (preparatory) · 32708ea6
  Leo Gordon authored May 23, 2012
  
  32708ea6
- reuse the meadow->name() method to check for availability [cleanup] · 394ad647
  Leo Gordon authored May 23, 2012
  
  394ad647
- pass in a Valley instead of the current_meadow (preparatory) · 37e63c93
  Leo Gordon authored May 23, 2012
  
  37e63c93
22 May, 2012 4 commits
- kill-worker-process-by-worker-id: simplified specific Meadow code by moving... · 21c06220
  Leo Gordon authored May 22, 2012
```
kill-worker-process-by-worker-id: simplified specific Meadow code by moving general checks out of them
```
  21c06220
- the Meadow hash is now by type, so no need to iterate to find Meadow-by-Worker · 3fcd5f98
  Leo Gordon authored May 22, 2012
  
  3fcd5f98
- untangling a bit. Queen does not need to re-sync and beekeeper does not need to fetch · 60f1d5e5
  Leo Gordon authored May 22, 2012
  
  60f1d5e5
- simplified output interface from schedule_workers and schedule_workers_resync_if_necessary · 2af05379
  Leo Gordon authored May 22, 2012
  
  2af05379
21 May, 2012 1 commit
- valley now contains available meadow objects, not classes; beekeeper contains... · 2dcf5e7d
  Leo Gordon authored May 21, 2012
```
valley now contains available meadow objects, not classes; beekeeper contains corrected algorithm for killing a worker
```
  2dcf5e7d
18 May, 2012 2 commits
- added schema and API support for meadow_name · 229783f5
  Leo Gordon authored May 18, 2012
  
  229783f5
- fixed a typo bug · 8b2f8d26
  Leo Gordon authored May 18, 2012
  
  8b2f8d26
12 May, 2012 1 commit
- moved meadow identification code to Valley.pm · 16997244
  Leo Gordon authored May 12, 2012
  
  16997244
11 May, 2012 1 commit
- a new class to represent a collection of available Meadows · a8d596d6
  Leo Gordon authored May 11, 2012
  
  a8d596d6
09 May, 2012 1 commit

bugfix+feature: -local_cpus renamed into -total_workers_max and so made... · 346613a2

Leo Gordon authored May 09, 2012

bugfix+feature: -local_cpus renamed into -total_workers_max and so made available for any meadow (not just LOCAL). Plus some renames

346613a2

08 May, 2012 2 commits
- check the availability of this Meadow on the given machine · 364d341e
  Leo Gordon authored May 08, 2012
  
  364d341e
- new function for finding all modules in a "directory" across the whole INC list · ad03106b
  Leo Gordon authored May 08, 2012
  
  ad03106b
02 May, 2012 4 commits
- removed create_rule() method that is no longer used · da4b0bb0
  Leo Gordon authored May 02, 2012
  
  da4b0bb0
- explicit new->store rules; retiring create_rule(); switch to using toString() · 2929ae1a
  Leo Gordon authored May 02, 2012
  
  2929ae1a
- switch to using uniform toString() diagnostic method · 82b427c0
  Leo Gordon authored May 02, 2012
  
  82b427c0
- move input_id_template stringification into DFR class · 2416bd72
  Leo Gordon authored May 02, 2012
  
  2416bd72
01 May, 2012 5 commits
- remove_by_condition_analysis_url() is no longer used by Compara, so has been removed · 0cbb4afd
  Leo Gordon authored May 01, 2012
  
  0cbb4afd
- a Process does not need a reference to the Queen · 8811e268
  Leo Gordon authored May 01, 2012
  
  8811e268
- analyze_tables() does not seem to be used anymore · d622eaf3
  Leo Gordon authored May 01, 2012
  
  d622eaf3
- bugfix: make sure runtime_msec is stored even when a job dies · e47201c5
  Leo Gordon authored May 01, 2012
  
  e47201c5
- no longer used · 04ad0fab
  Leo Gordon authored May 01, 2012
  
  04ad0fab
23 Apr, 2012 1 commit
- code for showing semaphores as nested boxes · 7e45b86c
  Leo Gordon authored Apr 23, 2012
  
  7e45b86c
27 Mar, 2012 1 commit
- a typo in comments · 076af646
  Leo Gordon authored Mar 27, 2012
  
  076af646
20 Mar, 2012 1 commit
- code optimization suggested by Matthieu · a1d37d9e
  Leo Gordon authored Mar 20, 2012
  
  a1d37d9e
19 Mar, 2012 1 commit
- weaken the link back from the object back to the adaptor · 4da57a10
  Leo Gordon authored Mar 19, 2012
  
  4da57a10
07 Mar, 2012 2 commits
- added support for reading compressed files · 595d9e36
  Leo Gordon authored Mar 07, 2012
  
  595d9e36
- a Bio::Seq example factory Runnable and a matching PipeConfig file · 5cb1771d
  Leo Gordon authored Mar 07, 2012
  
  5cb1771d
01 Mar, 2012 2 commits
- improved STDOUT/STDERR redirection into files; removal of job logs on success · f0edaecf
  Leo Gordon authored Mar 01, 2012
  
  f0edaecf
- a special module to deal with stacks of filehandle redirection · 2edfa351
  Leo Gordon authored Mar 01, 2012
  
  2edfa351
23 Feb, 2012 1 commit
- bugfix: only store values that have been set - avoid overriding defaults · 48f302a0
  Leo Gordon authored Feb 23, 2012
  
  48f302a0
20 Feb, 2012 1 commit
- attempt to display each funnel below its fan · e28bbc00
  Leo Gordon authored Feb 20, 2012
  
  e28bbc00
16 Feb, 2012 1 commit
- diagram tool no longer generates unnecessarily broken edges · 54252abc
  Leo Gordon authored Feb 16, 2012
  
  54252abc
14 Feb, 2012 1 commit
- Pipeline parameters cannot take undefined values. Warn and force into 0 · 579e38a1
  Leo Gordon authored Feb 14, 2012
  
  579e38a1
20 Jan, 2012 1 commit
- changes for rel.66 · 759a38f1
  Leo Gordon authored Jan 20, 2012
  
  759a38f1
08 Dec, 2011 2 commits
- checked in by mistake last time; took back the changes now · 153d7ccd
  Leo Gordon authored Dec 08, 2011
  
  153d7ccd
- Removed maximise_concurrency and added analysis_stats.priority to guide the... · 26a2ced3
  Leo Gordon authored Dec 08, 2011
```
Removed maximise_concurrency and added analysis_stats.priority to guide the scheduler; improved scheduler and LSF meadow
```
  26a2ced3
29 Nov, 2011 1 commit
- An extension to the dataflow-rule-driven semaphores ('2->A', '3->A' and 'A->1' notation) · 4ce3539f
  Leo Gordon authored Nov 29, 2011
  
  4ce3539f