Commits · 56400cf8e038dfd73fe6c44456406e006979dcb8 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Feb 06, 2023.

18 Mar, 2016 2 commits
- tweak: removing pipeline-wide parameters using the new dark_collection/shadow functionality · 56400cf8
  Leo Gordon authored Mar 18, 2016
  
  56400cf8
- dark_collection/shadow_object : tracking and subsequently deleting DB... · 54b92a64
  Leo Gordon authored Mar 18, 2016
```
dark_collection/shadow_object : tracking and subsequently deleting DB representations of objects removed from HivePipeline
```
  54b92a64
17 Mar, 2016 12 commits
- "global" has been replaced with "pipeline" in the tweak language · a605866c
  Matthieu Muffato authored Mar 17, 2016
  
  a605866c
- Merge branch 'version/2.3' · 494dc481
  Matthieu Muffato authored Mar 17, 2016
```
* version/2.3:
  bugfix [pgsql]: "argument of AND must be type boolean, not type integer"
  Worker::host has been replaced with Worker::meadow_host a long time ago !
```
  494dc481
- Merge branch 'version/2.2' into version/2.3 · 94e155fe
  Matthieu Muffato authored Mar 17, 2016
```
* version/2.2:
  bugfix [pgsql]: "argument of AND must be type boolean, not type integer"
```
  94e155fe
- Merge branch 'version/2.1' into version/2.2 · c6c65371
  Matthieu Muffato authored Mar 17, 2016
```
* version/2.1:
  bugfix [pgsql]: "argument of AND must be type boolean, not type integer"
```
  c6c65371
- Merge branch 'version/2.0' into version/2.1 · 429f94ad
  Matthieu Muffato authored Mar 17, 2016
```
* version/2.0:
  bugfix [pgsql]: "argument of AND must be type boolean, not type integer"
```
  429f94ad
- Merge branch 'version/1.9' into version/2.0 · 72e18dac
  Matthieu Muffato authored Mar 17, 2016
```
* version/1.9:
  bugfix [pgsql]: "argument of AND must be type boolean, not type integer"
```
  72e18dac
- bugfix [pgsql]: "argument of AND must be type boolean, not type integer" · e257b7de
  Matthieu Muffato authored Mar 17, 2016
  
  e257b7de
- Worker::host has been replaced with Worker::meadow_host a long time ago ! · 38a58495
  Matthieu Muffato authored Mar 16, 2016
  
  38a58495
- tweak: support for deleting analysis-specific parameters with # · e6f300d1
  Leo Gordon authored Mar 17, 2016
  
  e6f300d1
- tweak: renamed global-->pipeline in the tweak regular expressions and the output · f18326d4
  Leo Gordon authored Mar 17, 2016
  
  f18326d4
- tweak: rearranging the code for readability · 4824c33c
  Leo Gordon authored Mar 17, 2016
  
  4824c33c
- changed the resource_description into resource_class in Tweak.Show output for consistency · 9daed8f2
  Leo Gordon authored Mar 17, 2016
  
  9daed8f2
16 Mar, 2016 10 commits
- Worker::host has been replaced with Worker::meadow_host a long time ago ! · 4fb73fdc
  Matthieu Muffato authored Mar 16, 2016
  
  4fb73fdc
- The client-server test can also set "take_time" to 0 · 5063fa8a
  Matthieu Muffato authored Mar 16, 2016
  
  5063fa8a
- first implementation of Tweak.Show function · 968b3bd5
  Leo Gordon authored Mar 16, 2016
  
  968b3bd5
- bugfix: invalidate the id of a newly linked object · 476906ab
  Leo Gordon authored Mar 16, 2016
  
  476906ab
- bugfix: invalidate the id of a newly linked object · 09696bc3
  Leo Gordon authored Mar 16, 2016
  
  09696bc3
- bugfix: invalidate the id of a newly linked object · a56a3456
  Leo Gordon authored Mar 16, 2016
  
  a56a3456
- bugfix: invalidate the id of a newly linked object · 4f3ab49d
  Leo Gordon authored Mar 16, 2016
  
  4f3ab49d
- Made DatabaseDumper a subclass of SystemCmd · a3298ad9
  Matthieu Muffato authored Mar 16, 2016
  
  a3298ad9
- Merged fetch_input() and run() · 7882ed50
  Matthieu Muffato authored Mar 16, 2016
  
  7882ed50
- Moved _get_table_list and made it independent of $self->param() · 6d9224bf
  Matthieu Muffato authored Mar 16, 2016
  
  6d9224bf
15 Mar, 2016 11 commits
- bugfix: fixed a typo · ee04c671
  Leo Gordon authored Mar 15, 2016
  
  ee04c671
- be more strict: only run HivePipelines methods, but do not modify the Meta collection directly · 8534575c
  Leo Gordon authored Mar 15, 2016
  
  8534575c
- method rename: get_meta_value_by_key -> _meta_value_by_key (now also a setter) · 254ebbb9
  Leo Gordon authored Mar 15, 2016
  
  254ebbb9
- added the HivePipeline::hive_sql_schema_version() getter method · fa16a9e9
  Leo Gordon authored Mar 15, 2016
  
  fa16a9e9
- moved list_all_hive_tables() and list_all_hive_views() into HivePipeline; they remain getters-only · b04d774b
  Leo Gordon authored Mar 15, 2016
  
  b04d774b
- moved hive_use_triggers() into HivePipeline; it is still only a getter · 67aa0d80
  Leo Gordon authored Mar 15, 2016
  
  67aa0d80
- moved hive_auto_rebalance_semaphores() into HivePipeline and made it settable · 31b44c40
  Leo Gordon authored Mar 15, 2016
  
  31b44c40
- a new test for Utils::split_for_bash() function · d1ba0861
  Leo Gordon authored Mar 15, 2016
  
  d1ba0861
- bugfix: there can be only 1 resulting job on the funnel · ffe2962e
  Matthieu Muffato authored Mar 15, 2016
```
All the DataFlowTargets should be counted when checking that there is a
single job on the funnel. The previous code was counting the number of
successful rules, we now count their targets as well.
```
  ffe2962e
- I guess python needs __init__.py · 75a8b3f4
  Matthieu Muffato authored Mar 15, 2016
  
  75a8b3f4
- Moved the Python examples to the eHive.examples package · 54893c33
  Matthieu Muffato authored Mar 15, 2016
  
  54893c33
14 Mar, 2016 4 commits
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · d8246211
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  d8246211
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · e919deaa
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  e919deaa
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · 9072b34f
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  9072b34f
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · 29434b3e
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  29434b3e
11 Mar, 2016 1 commit
- let the -tweak system set attributes of the HivePipeline, if it ->can() · bf5c438d
  Leo Gordon authored Mar 11, 2016
  
  bf5c438d