Commits · 72aa8092f33d6eea3c47162a8bedf7ad514624b7 · ensembl-gh-mirror / ensembl-hive · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Jan 28, 2023.

15 Oct, 2014 6 commits
- only changed reference to the new ehive_doc.cssi in comments, this is not a schema change! · 72aa8092
  Leo Gordon authored Oct 15, 2014
  
  72aa8092
- a new script to automate generation of docs · 629cbe7f
  Leo Gordon authored Oct 15, 2014
  
  629cbe7f
- removed eHive version and self-reference to index.html · a1b1873d
  Leo Gordon authored Oct 15, 2014
  
  a1b1873d
- changed __END__ to __DATA__ to match other scripts · 5000b187
  Leo Gordon authored Oct 15, 2014
  
  5000b187
- moved most of the code into the main() sub · e00aefe0
  Leo Gordon authored Oct 15, 2014
  
  e00aefe0
- updated docs: -reset_failed_jobs instead of deprecated -reset_failed_jobs_for_analysis · 58d7130f
  Leo Gordon authored Oct 15, 2014
  
  58d7130f
13 Oct, 2014 1 commit
- removed a section on PipeConfig contents and hot-linked to the scripts documentation · bba26b52
  Leo Gordon authored Oct 13, 2014
  
  bba26b52
10 Oct, 2014 1 commit
- added a doc about running and monitoring an eHive pipeline · 9a6604fa
  Leo Gordon authored Oct 10, 2014
  
  9a6604fa
07 Oct, 2014 6 commits
- removed the old substitution syntax example and added expression examples · 3a43f351
  Leo Gordon authored Oct 07, 2014
  
  3a43f351
- stopped supporting the old $alpha substitution syntax and switched to new #alpha# syntax · 028a3967
  Leo Gordon authored Oct 07, 2014
  
  028a3967
- bugfix : fixed an invisible typo · 24019c73
  Leo Gordon authored Oct 07, 2014
  
  24019c73
- pulled in bugfix [to ENSCOMPARASW-166] : standaloneJob prints the error... · 94470751
  Leo Gordon authored Oct 07, 2014
```
pulled in bugfix [to ENSCOMPARASW-166] : standaloneJob prints the error message and exits with error code=1
```
  94470751
- bugfix [to ENSCOMPARASW-166 ] : standaloneJob prints the error message and exits with error code=1 · 3ed48903
  Leo Gordon authored Oct 07, 2014
  
  3ed48903
- Switched to running array-version of exec() to avoid extra quoting of parameters -- thanks, Lel! · 7499fc2f
  Leo Gordon authored Oct 07, 2014
  
  7499fc2f
06 Oct, 2014 4 commits
- API change: Limiter::preliminary_offer reports hitting the limit; produce... · 2c8d2c6a
  Leo Gordon authored Oct 06, 2014
```
API change: Limiter::preliminary_offer reports hitting the limit; produce detailed output of negotiations
```
  2c8d2c6a
- deprecated -logic_name and -analysis_id and simplified the specialization code · 00a1638b
  Leo Gordon authored Oct 06, 2014
  
  00a1638b
- report number of analyses discarded as not needing Workers · b1ccf212
  Leo Gordon authored Oct 06, 2014
  
  b1ccf212
- API change: last line of specialization log_buffer ends up in log_message table · 93839b9b
  Leo Gordon authored Oct 06, 2014
  
  93839b9b
03 Oct, 2014 5 commits
- introduced the concept of original_capacity() · d7a042ce
  Leo Gordon authored Oct 03, 2014
  
  d7a042ce
- reporting the command line being executed in a standard form · c65e87f3
  Leo Gordon authored Oct 03, 2014
  
  c65e87f3
- pretty-printing Scheduler's messages via scheduler_say() · a32bc0ab
  Leo Gordon authored Oct 03, 2014
  
  a32bc0ab
- [re]specialization message split into two halves, to wrap around the decision making log · 9ddc83e2
  Leo Gordon authored Oct 03, 2014
  
  9ddc83e2
- more decision-making explained through log_buffer messages · ba49fd68
  Leo Gordon authored Oct 03, 2014
  
  ba49fd68
01 Oct, 2014 3 commits
- API change: schedule_workers() now also returns the "plan" used by... · b522a5ff
  Leo Gordon authored Oct 01, 2014
```
API change: schedule_workers() now also returns the "plan" used by suggest_analysis_to_specialize_a_worker(); only one return format for schedule_workers().
```
  b522a5ff
- API change: turn log_buffer into an array instead of a growing string · 6451e1d3
  Leo Gordon authored Oct 01, 2014
  
  6451e1d3
- since safe_sync may or may not work, return the success indicator · f87a456d
  Leo Gordon authored Oct 01, 2014
  
  f87a456d
30 Sep, 2014 3 commits
- pulled in from version/2.1 : bugfix: added checking dataflow targets for fetchability · 413d2a1a
  Leo Gordon authored Sep 30, 2014
  
  413d2a1a
- bugfix: added checking dataflow targets for fetchability · 6c7d78de
  Leo Gordon authored Sep 30, 2014
  
  6c7d78de
- experiment: assume the Worker parameter is always valid and see where it fails · c7d37a45
  Leo Gordon authored Sep 30, 2014
  
  c7d37a45
29 Sep, 2014 1 commit
- API and command line option change: -reset_failed_jobs and -reset_all_jobs now... · ea64bcfb
  Leo Gordon authored Sep 29, 2014
```
API and command line option change: -reset_failed_jobs and -reset_all_jobs now work with -analyses_pattern
```
  ea64bcfb
26 Sep, 2014 2 commits
- pulled in from version/2.1 : restructured specialization, finalization and cleanup · 5bf87b7f
  Leo Gordon authored Sep 26, 2014
  
  5bf87b7f
- restructured specialization, finalization and cleanup · c3b85902
  Leo Gordon authored Sep 26, 2014
  
  c3b85902
25 Sep, 2014 1 commit
- Added script help and API pod to describe the new pattern-based fetching of Analyses · 691a441e
  Leo Gordon authored Sep 25, 2014
  
  691a441e
24 Sep, 2014 6 commits
- bugfix : if the given job_id does not match any Job, exit gracefully · b47a2081
  Leo Gordon authored Sep 24, 2014
  
  b47a2081
- beekeeper lists the Analyses that matched the given pattern or exits... · 9fed9da5
  Leo Gordon authored Sep 24, 2014
```
beekeeper lists the Analyses that matched the given pattern or exits immediately if there was no match
```
  9fed9da5
- deprecation of funny characters in Analysis.logic_name checked on Analysis creation · 8ce14d67
  Leo Gordon authored Sep 24, 2014
  
  8ce14d67
- intelligent merging with + for inclusion and - for exclusion of subpatterns · 9363a8f6
  Leo Gordon authored Sep 24, 2014
  
  9363a8f6
- bugfix: a.. and ..b ranges now also include the boundary value · 55036341
  Leo Gordon authored Sep 24, 2014
  
  55036341
- -analyses_pattern now supports merging multiple subpatterns together, and ensures uniqueness · c46ab03d
  Leo Gordon authored Sep 24, 2014
  
  c46ab03d
23 Sep, 2014 1 commit
- API change: specialization_arglist -> specialization_arghash; added support... · 94bb150f
  Leo Gordon authored Sep 23, 2014
```
API change: specialization_arglist -> specialization_arghash; added support for constrained respecialization
```
  94bb150f