GitLab

In enhanced mode, the string "a_b" is displayed as "a" followed by "b"
in subscript. Most of our analyses use underscore, so the fix is to
disable the enhanced mode.

pm=C means that Doxygen will receive C-style annotations for *.pm files,
as ensembldoxygenfilter.pl returns. This option is only needed for Doxygen >1.8.7

Ubuntu Xenial, which is now being rolled out as the default Linux distro
for Travis builds following the end of life of Ubuntu Trusty, does not
start services such as MySQL or PostgreSQL unless told to. Unfortunately
simply adding both to the list of services causes problems with
PostgreSQL tests, even under Trusty and if we explicitly request
PostgreSQL-9.6. See e.g.

https://api.travis-ci.org/v3/job/538735642/log.txt

Make sure we stick with Trusty until after the above has been resolved.

Explicitly enable database services for Travis builds

This conflicts with enabling the PostgreSQL service (see ENSCORESW-3159)
and doesn't seem to be required even when the service is not enabled.

Ubuntu Xenial, which is now being rolled out as the default Linux distro
for Travis builds following the end of life of Ubuntu Trusty, does not
start services such as MySQL or PostgreSQL unless told to. We use the
default distro in our builds so we are likely to be affected.

...but keep notifying #ehive-commits.

Enabled testing on 5.26, as per our announcement. Hopefully it will work !

* version/2.1:
  Allow the IF NOT EXISTS of CREATE DATABASE

* version/2.0:
  Allow the IF NOT EXISTS of CREATE DATABASE

* version/1.9:
  Allow the IF NOT EXISTS of CREATE DATABASE

* version/2.1:
  Go back to the original directory
  bugfix: chdir does not return the current path
  Added a warning about using too-recent versions of the core API

* version/2.0:
  Go back to the original directory
  bugfix: chdir does not return the current path
  Added a warning about using too-recent versions of the core API

* version/1.9:
  Go back to the original directory
  bugfix: chdir does not return the current path
  Added a warning about using too-recent versions of the core API

This must be an urban legend I have been spreading

bugfix : update bjobs call in check_worker_is_alive_and_mine for compatibility with LSF 9.1.1.1, and eliminate call to system grep