This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 26 Jun, 2013 1 commit
-
-
Leo Gordon authored
Changed an 'our' global variable to ENV{EHIVE_ROOT_DIR} to allow API-only users to set it and work as usual
-
- 25 Jun, 2013 2 commits
-
-
Miguel Pignatelli authored
-
Leo Gordon authored
bugfix: make sure users' tweaking of Data::Dumper::Maxdepth does not mess up stringify()' s operation
-
- 24 Jun, 2013 2 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
Utils/Config.pm no longer depends on ENSEMBL_CVS_ROOT_DIR, which becomes non-essential for non-EnsEMBL applications.
-
- 21 Jun, 2013 1 commit
-
-
Leo Gordon authored
-
- 18 Jun, 2013 2 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
-
- 14 Jun, 2013 2 commits
-
-
Leo Gordon authored
cosmetic: added short summary of Git commits between 23.Apr-14.Jun'2013 to Changelog for CVS-only users
-
Leo Gordon authored
PostgreSQL: connection parameters are now supplied on the command line (no need to set PG variables by hand)
-
- 13 Jun, 2013 6 commits
-
-
Leo Gordon authored
given -job_id Scheduler should take the Analysis into account and only submit a Worker for this Analysis
-
Leo Gordon authored
-
Leo Gordon authored
Adding foreign keys to PostgreSQL schema by reusing the MySQL file (the syntax happens to be exactly the same!)
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
- 12 Jun, 2013 1 commit
-
-
Leo Gordon authored
Has one known limitation (always INSERTs instead of INSERT_IGNORE and REPLACE) and may contain other bugs.
-
- 10 Jun, 2013 3 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
- 06 Jun, 2013 2 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
-
- 05 Jun, 2013 3 commits
-
-
Leo Gordon authored
Slow the example down a bit and allow 2 Workers. In "-can_specialize 1" mode the two Workers will complete the whole pipeline.
-
Leo Gordon authored
-
Leo Gordon authored
setting "-hive_force_init 1" will cause init_pipeline.pl to drop the database prior to creation (use with care!)
-
- 04 Jun, 2013 1 commit
-
-
Leo Gordon authored
added support for stringification/destringification of accumulated values (an element is allowed to be a complex structure)
-
- 03 Jun, 2013 4 commits
-
-
Leo Gordon authored
now supports sleeping for a floating point seconds; take_time can be given by a runtime-computed formula such as "1+rand(1)/1000"
-
Leo Gordon authored
-
Leo Gordon authored
-
Leo Gordon authored
-
- 01 Jun, 2013 1 commit
-
-
Leo Gordon authored
-
- 30 May, 2013 1 commit
-
-
Leo Gordon authored
-
- 29 May, 2013 1 commit
-
-
Leo Gordon authored
-
- 28 May, 2013 4 commits
-
-
Leo Gordon authored
Simplified logic to decide whether Scheduler needs a resync. Temporarily ignore limiters and look at the number of workers initially required. Trigger re-sync when sum_over_preferred_analyses(num_required_workers)==0. Trigger check-for-dead if valley->count_running_workers!=queen->count_running_workers.
-
Leo Gordon authored
finally implemented LSF's version of count_running_workers() and a Valley aggregator for all visible meadows
-
Leo Gordon authored
(currently they repeat a cycle of "wait t=1 sec, refresh stats" n=5 times, maybe both of these parameters could be tuned better in future)
-
Leo Gordon authored
-
- 23 May, 2013 1 commit
-
-
Leo Gordon authored
-
- 22 May, 2013 2 commits
-
-
Leo Gordon authored
-
Leo Gordon authored
-